miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 39418 0.7 0.389538
Target:  5'- cGGCcGCGGugAGGCGCGuCGCGUCCa--- -3'
miRNA:   3'- -CCGcCGCC--UUCGCGC-GCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 140032 0.7 0.389538
Target:  5'- cGGUGGCGGGcuGCGCccGgGCGCUCGa-- -3'
miRNA:   3'- -CCGCCGCCUu-CGCG--CgCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 132441 0.7 0.396792
Target:  5'- cGUGGUGGAGGCGCcggcgggGCGCgGCCuCGUc- -3'
miRNA:   3'- cCGCCGCCUUCGCG-------CGCG-CGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 106901 0.69 0.405775
Target:  5'- cGCGGCaaucgaccGAAGCGCGCGUGCgcuucguguCCGUGc -3'
miRNA:   3'- cCGCCGc-------CUUCGCGCGCGCG---------GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 17111 0.69 0.414052
Target:  5'- uGGCGucccaGCGG-AGCGCGgGCGCCaCGc-- -3'
miRNA:   3'- -CCGC-----CGCCuUCGCGCgCGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 158689 0.69 0.414052
Target:  5'- cGGCGGCcG-AGCGCGCGCcuaccgacGCCCu--- -3'
miRNA:   3'- -CCGCCGcCuUCGCGCGCG--------CGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 135863 0.69 0.422431
Target:  5'- aGGUGuGCGucGGGUGCGUGUGCCCGa-- -3'
miRNA:   3'- -CCGC-CGCc-UUCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 38842 0.69 0.422431
Target:  5'- cGGCGGCGGcGAGgGCGCGgGCg----- -3'
miRNA:   3'- -CCGCCGCC-UUCgCGCGCgCGggcauu -5'
7728 3' -62.9 NC_001973.1 + 86585 0.69 0.430912
Target:  5'- --aGGCGGAGcuCGCGCGCGCCgGc-- -3'
miRNA:   3'- ccgCCGCCUUc-GCGCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 7939 0.69 0.430912
Target:  5'- cGCGGcCGGcguGGUGCaCGCGCCCGc-- -3'
miRNA:   3'- cCGCC-GCCu--UCGCGcGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 104355 0.69 0.430912
Target:  5'- cGGCGGCGGcgacgaucAAGCGgGCGUcCUCGUc- -3'
miRNA:   3'- -CCGCCGCC--------UUCGCgCGCGcGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 45966 0.69 0.430912
Target:  5'- cGGCGGCc--GGCGCGCuCGCCCu--- -3'
miRNA:   3'- -CCGCCGccuUCGCGCGcGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 131490 0.69 0.439492
Target:  5'- aGGuCGGCGGGccCGcCGCGCGCCgGa-- -3'
miRNA:   3'- -CC-GCCGCCUucGC-GCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 158830 0.69 0.447296
Target:  5'- cGGCGGCcG-AGCGCGCGgacgagcCGCCCa--- -3'
miRNA:   3'- -CCGCCGcCuUCGCGCGC-------GCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 39277 0.69 0.448168
Target:  5'- cGCGGCGc-AGCGCGUGC-UCCGUGu -3'
miRNA:   3'- cCGCCGCcuUCGCGCGCGcGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 137201 0.69 0.448168
Target:  5'- cGCGGCGcGAGucGCGCggcgGCGCGUCCGc-- -3'
miRNA:   3'- cCGCCGC-CUU--CGCG----CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 13460 0.68 0.456939
Target:  5'- cGUGGCGGAGGCcaCGCG-GCCCa--- -3'
miRNA:   3'- cCGCCGCCUUCGc-GCGCgCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 55229 0.68 0.456939
Target:  5'- aGGCGGCGGcGGCGgGCGgcgagagGCCUGc-- -3'
miRNA:   3'- -CCGCCGCCuUCGCgCGCg------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 152337 0.68 0.456939
Target:  5'- cGGUGcGCGGGcggGGCGCGauaGCGCCgCGcGAa -3'
miRNA:   3'- -CCGC-CGCCU---UCGCGCg--CGCGG-GCaUU- -5'
7728 3' -62.9 NC_001973.1 + 94501 0.68 0.456939
Target:  5'- uGGCGGCGGcGAGCauCGCGaccgccgcccCGCCCGg-- -3'
miRNA:   3'- -CCGCCGCC-UUCGc-GCGC----------GCGGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.