miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 51655 0.8 0.090546
Target:  5'- aGGCGaccgccgaggacGCGGAGGCGCGCGCGCgCGa-- -3'
miRNA:   3'- -CCGC------------CGCCUUCGCGCGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 51814 0.66 0.607138
Target:  5'- uGCuGCGcGAGGCGCcCGCGUgCGUGGu -3'
miRNA:   3'- cCGcCGC-CUUCGCGcGCGCGgGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 53050 0.66 0.616905
Target:  5'- uGGUGGCuuuGGAAGaaggGCGCcCGCCUGUu- -3'
miRNA:   3'- -CCGCCG---CCUUCg---CGCGcGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 53861 0.78 0.125191
Target:  5'- cGGCGGCGGcgccgccGAGCGCG-GCGgCCGUGg -3'
miRNA:   3'- -CCGCCGCC-------UUCGCGCgCGCgGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 55229 0.68 0.456939
Target:  5'- aGGCGGCGGcGGCGgGCGgcgagagGCCUGc-- -3'
miRNA:   3'- -CCGCCGCCuUCGCgCGCg------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 55433 0.67 0.520706
Target:  5'- cGGCGGCGGGcccgacGGCGCG-GCGgaUCGUc- -3'
miRNA:   3'- -CCGCCGCCU------UCGCGCgCGCg-GGCAuu -5'
7728 3' -62.9 NC_001973.1 + 55830 0.7 0.358367
Target:  5'- aGGCcuGCGGAccGGCGagggcgaGCGCGCCCGc-- -3'
miRNA:   3'- -CCGc-CGCCU--UCGCg------CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 55889 0.66 0.626683
Target:  5'- cGGCGGCGGcAGGCuCGgGCucggGCUCGg-- -3'
miRNA:   3'- -CCGCCGCC-UUCGcGCgCG----CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 61018 0.72 0.294815
Target:  5'- -cCGGCGGAGGCGCGCGaCGCaggaGUu- -3'
miRNA:   3'- ccGCCGCCUUCGCGCGC-GCGgg--CAuu -5'
7728 3' -62.9 NC_001973.1 + 61067 0.67 0.527284
Target:  5'- cGGgGGCGGGuacaGGCGCagaccgggcaggccGCGCGgCCGa-- -3'
miRNA:   3'- -CCgCCGCCU----UCGCG--------------CGCGCgGGCauu -5'
7728 3' -62.9 NC_001973.1 + 61118 0.73 0.240391
Target:  5'- cGGCGGCGG-GGCGCGgCGUcgcuccucgaGCUCGUAc -3'
miRNA:   3'- -CCGCCGCCuUCGCGC-GCG----------CGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 61681 0.72 0.288321
Target:  5'- cGCGGCGcGAAGCGgcgucgGCGCGCUCGa-- -3'
miRNA:   3'- cCGCCGC-CUUCGCg-----CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 63637 0.67 0.539579
Target:  5'- cGGCcGCGuGggGCG-GCGCGCCgGc-- -3'
miRNA:   3'- -CCGcCGC-CuuCGCgCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 67610 0.74 0.213939
Target:  5'- uGGCGGCGGAgcuGGUGCcggcCGCGUCCGa-- -3'
miRNA:   3'- -CCGCCGCCU---UCGCGc---GCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 72830 0.67 0.558677
Target:  5'- aGGcCGGCGGccGC-CGCGCaGUCCGa-- -3'
miRNA:   3'- -CC-GCCGCCuuCGcGCGCG-CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 74803 0.68 0.492902
Target:  5'- gGGCGcGCacgcGAGGCGCGuCGUGCgCGUGc -3'
miRNA:   3'- -CCGC-CGc---CUUCGCGC-GCGCGgGCAUu -5'
7728 3' -62.9 NC_001973.1 + 77017 0.74 0.229496
Target:  5'- gGGCGGCGGcGGCGCGCGCaaggacgauaGCuCCa--- -3'
miRNA:   3'- -CCGCCGCCuUCGCGCGCG----------CG-GGcauu -5'
7728 3' -62.9 NC_001973.1 + 77354 0.66 0.587659
Target:  5'- cGCGGCacaccGAcGCGgcCGCGCGCCCGc-- -3'
miRNA:   3'- cCGCCGc----CUuCGC--GCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 81102 0.67 0.530112
Target:  5'- gGGC-GCGGGcucguugaaGGCGCGCuuGCGCCCcgacGUGAc -3'
miRNA:   3'- -CCGcCGCCU---------UCGCGCG--CGCGGG----CAUU- -5'
7728 3' -62.9 NC_001973.1 + 82315 0.73 0.245999
Target:  5'- aGGUGGCGcuGGCGUGCGUG-CCGUAGc -3'
miRNA:   3'- -CCGCCGCcuUCGCGCGCGCgGGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.