Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 82447 | 0.67 | 0.520706 |
Target: 5'- cGGCGuaGGucauGCGCGUuauGCGCgCCGUGu -3' miRNA: 3'- -CCGCcgCCuu--CGCGCG---CGCG-GGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 83034 | 0.77 | 0.142021 |
Target: 5'- cGGCGG-GcGAGGCG-GCGCGCCCGUc- -3' miRNA: 3'- -CCGCCgC-CUUCGCgCGCGCGGGCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 83087 | 0.71 | 0.34345 |
Target: 5'- aGCGGCGGcGGCGcCGuCGCGCUCa--- -3' miRNA: 3'- cCGCCGCCuUCGC-GC-GCGCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 83942 | 0.66 | 0.597387 |
Target: 5'- cGGCGcGCcgcucGGAGGCGgGCGCGUCg---- -3' miRNA: 3'- -CCGC-CG-----CCUUCGCgCGCGCGGgcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 84255 | 0.73 | 0.257538 |
Target: 5'- cGCGGCGGAGGUGCuCGCGCUg---- -3' miRNA: 3'- cCGCCGCCUUCGCGcGCGCGGgcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 86460 | 1.07 | 0.000953 |
Target: 5'- cGGCGGCGGAAGCGCGCGCGCCCGUAAc -3' miRNA: 3'- -CCGCCGCCUUCGCGCGCGCGGGCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 86585 | 0.69 | 0.430912 |
Target: 5'- --aGGCGGAGcuCGCGCGCGCCgGc-- -3' miRNA: 3'- ccgCCGCCUUc-GCGCGCGCGGgCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 86734 | 0.66 | 0.616905 |
Target: 5'- cGCGGCGacGAacggcGGCGCGCG-GCCuCGUu- -3' miRNA: 3'- cCGCCGC--CU-----UCGCGCGCgCGG-GCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 87116 | 0.74 | 0.219022 |
Target: 5'- cGCGuGCGcGgcGUGCGCGCGCCgGUGc -3' miRNA: 3'- cCGC-CGC-CuuCGCGCGCGCGGgCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 89537 | 0.77 | 0.128657 |
Target: 5'- gGGCGGUGGGcgaGGCG-GUGCGCCCGa-- -3' miRNA: 3'- -CCGCCGCCU---UCGCgCGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 90314 | 0.75 | 0.190025 |
Target: 5'- cGGuCGGCGGGcgaGGCG-GUGCGCCCGa-- -3' miRNA: 3'- -CC-GCCGCCU---UCGCgCGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 90420 | 0.66 | 0.626683 |
Target: 5'- cGGCGGUGuGcAGCGCGUGCGaCUuUAGg -3' miRNA: 3'- -CCGCCGC-CuUCGCGCGCGCgGGcAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 94286 | 0.66 | 0.577961 |
Target: 5'- aGGCGccgaGGGaaGGCG-GCGCGCCCGc-- -3' miRNA: 3'- -CCGCcg--CCU--UCGCgCGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 94428 | 0.68 | 0.492902 |
Target: 5'- cGGCGGCGuuGGCcCGuCGCGCuaGUAAu -3' miRNA: 3'- -CCGCCGCcuUCGcGC-GCGCGggCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 94501 | 0.68 | 0.456939 |
Target: 5'- uGGCGGCGGcGAGCauCGCGaccgccgcccCGCCCGg-- -3' miRNA: 3'- -CCGCCGCC-UUCGc-GCGC----------GCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 94726 | 0.75 | 0.181135 |
Target: 5'- aGGCGGcCGGcaa-GCGCGCGUCCGUGu -3' miRNA: 3'- -CCGCC-GCCuucgCGCGCGCGGGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 95074 | 0.67 | 0.568299 |
Target: 5'- gGGCaGCuucGAGGCGCuGCaGCGCUCGUGc -3' miRNA: 3'- -CCGcCGc--CUUCGCG-CG-CGCGGGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 95716 | 0.67 | 0.535785 |
Target: 5'- cGGC-GCGGugcgccggcuguuGGCGCaggGCGCGCCCGc-- -3' miRNA: 3'- -CCGcCGCCu------------UCGCG---CGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 96880 | 0.66 | 0.607138 |
Target: 5'- uGGCcGCGGAucugugcgcGGCGgGCGCGUCgGa-- -3' miRNA: 3'- -CCGcCGCCU---------UCGCgCGCGCGGgCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 97208 | 0.67 | 0.549102 |
Target: 5'- cGCGuuaGAGGCGCGCGUGCCCc--- -3' miRNA: 3'- cCGCcgcCUUCGCGCGCGCGGGcauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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