miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 98343 0.72 0.288321
Target:  5'- aGCGGCGGcGGCGCGCGUucGgCCGc-- -3'
miRNA:   3'- cCGCCGCCuUCGCGCGCG--CgGGCauu -5'
7728 3' -62.9 NC_001973.1 + 101214 0.7 0.358367
Target:  5'- gGGCGGCgcuucuGGucGCGCcacaGCGCGCCCa--- -3'
miRNA:   3'- -CCGCCG------CCuuCGCG----CGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 101559 0.76 0.167272
Target:  5'- uGGCGcGUGGuccAGGCGCGCacguugcucacgucGCGCCCGUAGu -3'
miRNA:   3'- -CCGC-CGCC---UUCGCGCG--------------CGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 101967 0.72 0.275673
Target:  5'- uGGCGGCGacGAuGCGCGCcagcGUGUCCGUGu -3'
miRNA:   3'- -CCGCCGC--CUuCGCGCG----CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 102633 0.66 0.577961
Target:  5'- cGCGGCcacGGCGCGCgacuggcaaacGCGCUCGUGc -3'
miRNA:   3'- cCGCCGccuUCGCGCG-----------CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 103938 0.67 0.519769
Target:  5'- cGCGGCGcGggGCGUGCcgucgcgGCGCCa---- -3'
miRNA:   3'- cCGCCGC-CuuCGCGCG-------CGCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 104225 0.66 0.607138
Target:  5'- aGGCGaucGCGcucGgcGCGCuGCGCGUCCGUc- -3'
miRNA:   3'- -CCGC---CGC---CuuCGCG-CGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 104355 0.69 0.430912
Target:  5'- cGGCGGCGGcgacgaucAAGCGgGCGUcCUCGUc- -3'
miRNA:   3'- -CCGCCGCC--------UUCGCgCGCGcGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 105226 0.68 0.492902
Target:  5'- uGGC-GCGGAAcGCGCaUGUGUCCGUGc -3'
miRNA:   3'- -CCGcCGCCUU-CGCGcGCGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 105471 0.67 0.530112
Target:  5'- cGCGGCGGGcacaugauguGGcCGgGCGCGUugccgCCGUAGu -3'
miRNA:   3'- cCGCCGCCU----------UC-GCgCGCGCG-----GGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 106787 0.66 0.587659
Target:  5'- uGGUGauuGCGGAGccccccGCGCcCGCGCCCGc-- -3'
miRNA:   3'- -CCGC---CGCCUU------CGCGcGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 106901 0.69 0.405775
Target:  5'- cGCGGCaaucgaccGAAGCGCGCGUGCgcuucguguCCGUGc -3'
miRNA:   3'- cCGCCGc-------CUUCGCGCGCGCG---------GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 108440 0.67 0.530112
Target:  5'- aGCGGCGcu--CGCGCGaCGCCCGc-- -3'
miRNA:   3'- cCGCCGCcuucGCGCGC-GCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 109129 0.67 0.549102
Target:  5'- cGGCGGCGGccucuuGgGCGC-CGCCuCGa-- -3'
miRNA:   3'- -CCGCCGCCuu----CgCGCGcGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 109164 0.66 0.597387
Target:  5'- gGGCGaGcCGGucGCcCGCGCGCUCGc-- -3'
miRNA:   3'- -CCGC-C-GCCuuCGcGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 111248 0.67 0.549102
Target:  5'- gGGCGaGgGGGucgacGCGgaCGCGCuGCCCGUGGg -3'
miRNA:   3'- -CCGC-CgCCUu----CGC--GCGCG-CGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 111289 0.68 0.4658
Target:  5'- cGGUGGUGGuGGCGC-CGCGCgUGa-- -3'
miRNA:   3'- -CCGCCGCCuUCGCGcGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 111940 0.68 0.508578
Target:  5'- cGGCGGCgacuucuccgacccGGcGGCcgaGCGCGUGCCCa--- -3'
miRNA:   3'- -CCGCCG--------------CCuUCG---CGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 115821 0.67 0.549102
Target:  5'- cGUGGUGGAgaacaAGCGCGUcgacaaccuguGCGCCCu--- -3'
miRNA:   3'- cCGCCGCCU-----UCGCGCG-----------CGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 118115 0.66 0.577961
Target:  5'- cGCGGCgcucaagcaGGuGGCGCGCGaGCCCa--- -3'
miRNA:   3'- cCGCCG---------CCuUCGCGCGCgCGGGcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.