Results 121 - 125 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 157735 | 0.66 | 0.577961 |
Target: 5'- --aGGUGGAgcgcGGUGCGCGCGCUgcacucuuUGUGAa -3' miRNA: 3'- ccgCCGCCU----UCGCGCGCGCGG--------GCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 157883 | 0.67 | 0.538629 |
Target: 5'- uGCGGCucgugucGGAGGuCGCGgccgcCGCGCCCGcGAg -3' miRNA: 3'- cCGCCG-------CCUUC-GCGC-----GCGCGGGCaUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 158689 | 0.69 | 0.414052 |
Target: 5'- cGGCGGCcG-AGCGCGCGCcuaccgacGCCCu--- -3' miRNA: 3'- -CCGCCGcCuUCGCGCGCG--------CGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 158754 | 0.67 | 0.539579 |
Target: 5'- -cCGGCGaccGAGCGCGCGCcgaccuacacGCCCGa-- -3' miRNA: 3'- ccGCCGCc--UUCGCGCGCG----------CGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 158830 | 0.69 | 0.447296 |
Target: 5'- cGGCGGCcG-AGCGCGCGgacgagcCGCCCa--- -3' miRNA: 3'- -CCGCCGcCuUCGCGCGC-------GCGGGcauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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