Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 124763 | 0.68 | 0.483785 |
Target: 5'- cGC-GCGGu-GCGCGCGCGCuCUGUu- -3' miRNA: 3'- cCGcCGCCuuCGCGCGCGCG-GGCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 124199 | 0.67 | 0.539579 |
Target: 5'- aGGUcGCGGcGGCGCGC-CGgCUCGUGAc -3' miRNA: 3'- -CCGcCGCCuUCGCGCGcGC-GGGCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 123107 | 0.71 | 0.314976 |
Target: 5'- aGCGGCaGGuugucGGCGCGCGCGaUCCGg-- -3' miRNA: 3'- cCGCCG-CCu----UCGCGCGCGC-GGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 122605 | 0.72 | 0.275673 |
Target: 5'- uGCGGCGGAGGCGUcgGCGgCGCCg---- -3' miRNA: 3'- cCGCCGCCUUCGCG--CGC-GCGGgcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 120725 | 0.68 | 0.46491 |
Target: 5'- cGCGGCGaGAgaggaggccguguGGCGCGCGCaGCCgccgaCGUGu -3' miRNA: 3'- cCGCCGC-CU-------------UCGCGCGCG-CGG-----GCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 118115 | 0.66 | 0.577961 |
Target: 5'- cGCGGCgcucaagcaGGuGGCGCGCGaGCCCa--- -3' miRNA: 3'- cCGCCG---------CCuUCGCGCGCgCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 115821 | 0.67 | 0.549102 |
Target: 5'- cGUGGUGGAgaacaAGCGCGUcgacaaccuguGCGCCCu--- -3' miRNA: 3'- cCGCCGCCU-----UCGCGCG-----------CGCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 111940 | 0.68 | 0.508578 |
Target: 5'- cGGCGGCgacuucuccgacccGGcGGCcgaGCGCGUGCCCa--- -3' miRNA: 3'- -CCGCCG--------------CCuUCG---CGCGCGCGGGcauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 111289 | 0.68 | 0.4658 |
Target: 5'- cGGUGGUGGuGGCGC-CGCGCgUGa-- -3' miRNA: 3'- -CCGCCGCCuUCGCGcGCGCGgGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 111248 | 0.67 | 0.549102 |
Target: 5'- gGGCGaGgGGGucgacGCGgaCGCGCuGCCCGUGGg -3' miRNA: 3'- -CCGC-CgCCUu----CGC--GCGCG-CGGGCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 109164 | 0.66 | 0.597387 |
Target: 5'- gGGCGaGcCGGucGCcCGCGCGCUCGc-- -3' miRNA: 3'- -CCGC-C-GCCuuCGcGCGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 109129 | 0.67 | 0.549102 |
Target: 5'- cGGCGGCGGccucuuGgGCGC-CGCCuCGa-- -3' miRNA: 3'- -CCGCCGCCuu----CgCGCGcGCGG-GCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 108440 | 0.67 | 0.530112 |
Target: 5'- aGCGGCGcu--CGCGCGaCGCCCGc-- -3' miRNA: 3'- cCGCCGCcuucGCGCGC-GCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 106901 | 0.69 | 0.405775 |
Target: 5'- cGCGGCaaucgaccGAAGCGCGCGUGCgcuucguguCCGUGc -3' miRNA: 3'- cCGCCGc-------CUUCGCGCGCGCG---------GGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 106787 | 0.66 | 0.587659 |
Target: 5'- uGGUGauuGCGGAGccccccGCGCcCGCGCCCGc-- -3' miRNA: 3'- -CCGC---CGCCUU------CGCGcGCGCGGGCauu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 105471 | 0.67 | 0.530112 |
Target: 5'- cGCGGCGGGcacaugauguGGcCGgGCGCGUugccgCCGUAGu -3' miRNA: 3'- cCGCCGCCU----------UC-GCgCGCGCG-----GGCAUU- -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 105226 | 0.68 | 0.492902 |
Target: 5'- uGGC-GCGGAAcGCGCaUGUGUCCGUGc -3' miRNA: 3'- -CCGcCGCCUU-CGCGcGCGCGGGCAUu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 104355 | 0.69 | 0.430912 |
Target: 5'- cGGCGGCGGcgacgaucAAGCGgGCGUcCUCGUc- -3' miRNA: 3'- -CCGCCGCC--------UUCGCgCGCGcGGGCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 104225 | 0.66 | 0.607138 |
Target: 5'- aGGCGaucGCGcucGgcGCGCuGCGCGUCCGUc- -3' miRNA: 3'- -CCGC---CGC---CuuCGCG-CGCGCGGGCAuu -5' |
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7728 | 3' | -62.9 | NC_001973.1 | + | 103938 | 0.67 | 0.519769 |
Target: 5'- cGCGGCGcGggGCGUGCcgucgcgGCGCCa---- -3' miRNA: 3'- cCGCCGC-CuuCGCGCG-------CGCGGgcauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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