miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 102633 0.66 0.577961
Target:  5'- cGCGGCcacGGCGCGCgacuggcaaacGCGCUCGUGc -3'
miRNA:   3'- cCGCCGccuUCGCGCG-----------CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 101967 0.72 0.275673
Target:  5'- uGGCGGCGacGAuGCGCGCcagcGUGUCCGUGu -3'
miRNA:   3'- -CCGCCGC--CUuCGCGCG----CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 101559 0.76 0.167272
Target:  5'- uGGCGcGUGGuccAGGCGCGCacguugcucacgucGCGCCCGUAGu -3'
miRNA:   3'- -CCGC-CGCC---UUCGCGCG--------------CGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 101214 0.7 0.358367
Target:  5'- gGGCGGCgcuucuGGucGCGCcacaGCGCGCCCa--- -3'
miRNA:   3'- -CCGCCG------CCuuCGCG----CGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 98343 0.72 0.288321
Target:  5'- aGCGGCGGcGGCGCGCGUucGgCCGc-- -3'
miRNA:   3'- cCGCCGCCuUCGCGCGCG--CgGGCauu -5'
7728 3' -62.9 NC_001973.1 + 97208 0.67 0.549102
Target:  5'- cGCGuuaGAGGCGCGCGUGCCCc--- -3'
miRNA:   3'- cCGCcgcCUUCGCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 96880 0.66 0.607138
Target:  5'- uGGCcGCGGAucugugcgcGGCGgGCGCGUCgGa-- -3'
miRNA:   3'- -CCGcCGCCU---------UCGCgCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 95716 0.67 0.535785
Target:  5'- cGGC-GCGGugcgccggcuguuGGCGCaggGCGCGCCCGc-- -3'
miRNA:   3'- -CCGcCGCCu------------UCGCG---CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 95074 0.67 0.568299
Target:  5'- gGGCaGCuucGAGGCGCuGCaGCGCUCGUGc -3'
miRNA:   3'- -CCGcCGc--CUUCGCG-CG-CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 94726 0.75 0.181135
Target:  5'- aGGCGGcCGGcaa-GCGCGCGUCCGUGu -3'
miRNA:   3'- -CCGCC-GCCuucgCGCGCGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 94501 0.68 0.456939
Target:  5'- uGGCGGCGGcGAGCauCGCGaccgccgcccCGCCCGg-- -3'
miRNA:   3'- -CCGCCGCC-UUCGc-GCGC----------GCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 94428 0.68 0.492902
Target:  5'- cGGCGGCGuuGGCcCGuCGCGCuaGUAAu -3'
miRNA:   3'- -CCGCCGCcuUCGcGC-GCGCGggCAUU- -5'
7728 3' -62.9 NC_001973.1 + 94286 0.66 0.577961
Target:  5'- aGGCGccgaGGGaaGGCG-GCGCGCCCGc-- -3'
miRNA:   3'- -CCGCcg--CCU--UCGCgCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 90420 0.66 0.626683
Target:  5'- cGGCGGUGuGcAGCGCGUGCGaCUuUAGg -3'
miRNA:   3'- -CCGCCGC-CuUCGCGCGCGCgGGcAUU- -5'
7728 3' -62.9 NC_001973.1 + 90314 0.75 0.190025
Target:  5'- cGGuCGGCGGGcgaGGCG-GUGCGCCCGa-- -3'
miRNA:   3'- -CC-GCCGCCU---UCGCgCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 89537 0.77 0.128657
Target:  5'- gGGCGGUGGGcgaGGCG-GUGCGCCCGa-- -3'
miRNA:   3'- -CCGCCGCCU---UCGCgCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 87116 0.74 0.219022
Target:  5'- cGCGuGCGcGgcGUGCGCGCGCCgGUGc -3'
miRNA:   3'- cCGC-CGC-CuuCGCGCGCGCGGgCAUu -5'
7728 3' -62.9 NC_001973.1 + 86734 0.66 0.616905
Target:  5'- cGCGGCGacGAacggcGGCGCGCG-GCCuCGUu- -3'
miRNA:   3'- cCGCCGC--CU-----UCGCGCGCgCGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 86585 0.69 0.430912
Target:  5'- --aGGCGGAGcuCGCGCGCGCCgGc-- -3'
miRNA:   3'- ccgCCGCCUUc-GCGCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 86460 1.07 0.000953
Target:  5'- cGGCGGCGGAAGCGCGCGCGCCCGUAAc -3'
miRNA:   3'- -CCGCCGCCUUCGCGCGCGCGGGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.