miRNA display CGI


Results 101 - 120 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 29980 0.68 0.511367
Target:  5'- cGGUGGUGGgcGCGUauaucuGCGaGCCCGa-- -3'
miRNA:   3'- -CCGCCGCCuuCGCG------CGCgCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 111940 0.68 0.508578
Target:  5'- cGGCGGCgacuucuccgacccGGcGGCcgaGCGCGUGCCCa--- -3'
miRNA:   3'- -CCGCCG--------------CCuUCG---CGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 3569 0.68 0.502097
Target:  5'- gGGCGcGCGauGAccgacGGCGCGCGCuucgGCUCGUAc -3'
miRNA:   3'- -CCGC-CGC--CU-----UCGCGCGCG----CGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 105226 0.68 0.492902
Target:  5'- uGGC-GCGGAAcGCGCaUGUGUCCGUGc -3'
miRNA:   3'- -CCGcCGCCUU-CGCGcGCGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 94428 0.68 0.492902
Target:  5'- cGGCGGCGuuGGCcCGuCGCGCuaGUAAu -3'
miRNA:   3'- -CCGCCGCcuUCGcGC-GCGCGggCAUU- -5'
7728 3' -62.9 NC_001973.1 + 108440 0.67 0.530112
Target:  5'- aGCGGCGcu--CGCGCGaCGCCCGc-- -3'
miRNA:   3'- cCGCCGCcuucGCGCGC-GCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 95716 0.67 0.535785
Target:  5'- cGGC-GCGGugcgccggcuguuGGCGCaggGCGCGCCCGc-- -3'
miRNA:   3'- -CCGcCGCCu------------UCGCG---CGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 95074 0.67 0.568299
Target:  5'- gGGCaGCuucGAGGCGCuGCaGCGCUCGUGc -3'
miRNA:   3'- -CCGcCGc--CUUCGCG-CG-CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 72830 0.67 0.558677
Target:  5'- aGGcCGGCGGccGC-CGCGCaGUCCGa-- -3'
miRNA:   3'- -CC-GCCGCCuuCGcGCGCG-CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 46379 0.67 0.557717
Target:  5'- cGGUGGUuccugagGGAuuugcGGCGCGCGCGCgaCGa-- -3'
miRNA:   3'- -CCGCCG-------CCU-----UCGCGCGCGCGg-GCauu -5'
7728 3' -62.9 NC_001973.1 + 115821 0.67 0.549102
Target:  5'- cGUGGUGGAgaacaAGCGCGUcgacaaccuguGCGCCCu--- -3'
miRNA:   3'- cCGCCGCCU-----UCGCGCG-----------CGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 111248 0.67 0.549102
Target:  5'- gGGCGaGgGGGucgacGCGgaCGCGCuGCCCGUGGg -3'
miRNA:   3'- -CCGC-CgCCUu----CGC--GCGCG-CGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 109129 0.67 0.549102
Target:  5'- cGGCGGCGGccucuuGgGCGC-CGCCuCGa-- -3'
miRNA:   3'- -CCGCCGCCuu----CgCGCGcGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 97208 0.67 0.549102
Target:  5'- cGCGuuaGAGGCGCGCGUGCCCc--- -3'
miRNA:   3'- cCGCcgcCUUCGCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 50281 0.67 0.539579
Target:  5'- cGGCacauGCGGAugcGGCGCuugccguucaccGUGCGCUCGUAGc -3'
miRNA:   3'- -CCGc---CGCCU---UCGCG------------CGCGCGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 158754 0.67 0.539579
Target:  5'- -cCGGCGaccGAGCGCGCGCcgaccuacacGCCCGa-- -3'
miRNA:   3'- ccGCCGCc--UUCGCGCGCG----------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 138439 0.67 0.539579
Target:  5'- cGCGcGCGGAaaGGCGCGCGUcagaugcuCCCGa-- -3'
miRNA:   3'- cCGC-CGCCU--UCGCGCGCGc-------GGGCauu -5'
7728 3' -62.9 NC_001973.1 + 63637 0.67 0.539579
Target:  5'- cGGCcGCGuGggGCG-GCGCGCCgGc-- -3'
miRNA:   3'- -CCGcCGC-CuuCGCgCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 124199 0.67 0.539579
Target:  5'- aGGUcGCGGcGGCGCGC-CGgCUCGUGAc -3'
miRNA:   3'- -CCGcCGCCuUCGCGCGcGC-GGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 157883 0.67 0.538629
Target:  5'- uGCGGCucgugucGGAGGuCGCGgccgcCGCGCCCGcGAg -3'
miRNA:   3'- cCGCCG-------CCUUC-GCGC-----GCGCGGGCaUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.