miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 42609 0.66 0.616905
Target:  5'- uGCGGCGcGAGgGCGCGguCGCCaCGg-- -3'
miRNA:   3'- cCGCCGCcUUCgCGCGC--GCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 53050 0.66 0.616905
Target:  5'- uGGUGGCuuuGGAAGaaggGCGCcCGCCUGUu- -3'
miRNA:   3'- -CCGCCG---CCUUCg---CGCGcGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 14016 0.66 0.616905
Target:  5'- cGGUGGCGGGcGGCGuCG-GCGUCgCGUu- -3'
miRNA:   3'- -CCGCCGCCU-UCGC-GCgCGCGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 86734 0.66 0.616905
Target:  5'- cGCGGCGacGAacggcGGCGCGCG-GCCuCGUu- -3'
miRNA:   3'- cCGCCGC--CU-----UCGCGCGCgCGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 55889 0.66 0.626683
Target:  5'- cGGCGGCGGcAGGCuCGgGCucggGCUCGg-- -3'
miRNA:   3'- -CCGCCGCC-UUCGcGCgCG----CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 144160 0.66 0.597387
Target:  5'- aGCcGCaGGAcuacgAGCGCGCGCGCgCGg-- -3'
miRNA:   3'- cCGcCG-CCU-----UCGCGCGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 109164 0.66 0.597387
Target:  5'- gGGCGaGcCGGucGCcCGCGCGCUCGc-- -3'
miRNA:   3'- -CCGC-C-GCCuuCGcGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 102633 0.66 0.577961
Target:  5'- cGCGGCcacGGCGCGCgacuggcaaacGCGCUCGUGc -3'
miRNA:   3'- cCGCCGccuUCGCGCG-----------CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 135935 0.66 0.577961
Target:  5'- cGCGGCGauGGCGCGCcaaguGCGCCaaGUGg -3'
miRNA:   3'- cCGCCGCcuUCGCGCG-----CGCGGg-CAUu -5'
7728 3' -62.9 NC_001973.1 + 21755 0.66 0.577961
Target:  5'- uGGCGcGCauuuauaAAGCGCGCGCGCUCu--- -3'
miRNA:   3'- -CCGC-CGcc-----UUCGCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 45660 0.66 0.577961
Target:  5'- cGCGGCcugcgcgucucGGAuucGCGCGUGgGCgCCGUGc -3'
miRNA:   3'- cCGCCG-----------CCUu--CGCGCGCgCG-GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 118115 0.66 0.577961
Target:  5'- cGCGGCgcucaagcaGGuGGCGCGCGaGCCCa--- -3'
miRNA:   3'- cCGCCG---------CCuUCGCGCGCgCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 16925 0.66 0.581837
Target:  5'- cGGCGGCGcagcaaaaaGAAGgGCGUuuccgcgaagcggccGUGCCCGa-- -3'
miRNA:   3'- -CCGCCGC---------CUUCgCGCG---------------CGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 31871 0.66 0.587659
Target:  5'- --aGGCGGuGGCGCGCaCGUCgGUGu -3'
miRNA:   3'- ccgCCGCCuUCGCGCGcGCGGgCAUu -5'
7728 3' -62.9 NC_001973.1 + 32326 0.66 0.587659
Target:  5'- gGGCGuccGCGGgcGUGCGaaaGCGCacuCCGUAc -3'
miRNA:   3'- -CCGC---CGCCuuCGCGCg--CGCG---GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 34969 0.66 0.587659
Target:  5'- cGCGcucaCGGAcgaGGUGUGCGUGCCCGc-- -3'
miRNA:   3'- cCGCc---GCCU---UCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 77354 0.66 0.587659
Target:  5'- cGCGGCacaccGAcGCGgcCGCGCGCCCGc-- -3'
miRNA:   3'- cCGCCGc----CUuCGC--GCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 106787 0.66 0.587659
Target:  5'- uGGUGauuGCGGAGccccccGCGCcCGCGCCCGc-- -3'
miRNA:   3'- -CCGC---CGCCUU------CGCGcGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 9821 0.66 0.596413
Target:  5'- cGGCGucguCGGAgaaGGCGCuuuccucGCGCGCCCa--- -3'
miRNA:   3'- -CCGCc---GCCU---UCGCG-------CGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 83942 0.66 0.597387
Target:  5'- cGGCGcGCcgcucGGAGGCGgGCGCGUCg---- -3'
miRNA:   3'- -CCGC-CG-----CCUUCGCgCGCGCGGgcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.