Results 81 - 100 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 124199 | 0.67 | 0.539579 |
Target: 5'- aGGUcGCGGcGGCGCGC-CGgCUCGUGAc -3' miRNA: 3'- -CCGcCGCCuUCGCGCGcGC-GGGCAUU- -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 157883 | 0.67 | 0.538629 |
Target: 5'- uGCGGCucgugucGGAGGuCGCGgccgcCGCGCCCGcGAg -3' miRNA: 3'- cCGCCG-------CCUUC-GCGC-----GCGCGGGCaUU- -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 95716 | 0.67 | 0.535785 |
Target: 5'- cGGC-GCGGugcgccggcuguuGGCGCaggGCGCGCCCGc-- -3' miRNA: 3'- -CCGcCGCCu------------UCGCG---CGCGCGGGCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 108440 | 0.67 | 0.530112 |
Target: 5'- aGCGGCGcu--CGCGCGaCGCCCGc-- -3' miRNA: 3'- cCGCCGCcuucGCGCGC-GCGGGCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 105471 | 0.67 | 0.530112 |
Target: 5'- cGCGGCGGGcacaugauguGGcCGgGCGCGUugccgCCGUAGu -3' miRNA: 3'- cCGCCGCCU----------UC-GCgCGCGCG-----GGCAUU- -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 81102 | 0.67 | 0.530112 |
Target: 5'- gGGC-GCGGGcucguugaaGGCGCGCuuGCGCCCcgacGUGAc -3' miRNA: 3'- -CCGcCGCCU---------UCGCGCG--CGCGGG----CAUU- -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 19539 | 0.67 | 0.530112 |
Target: 5'- aGGCGGUGcGcGGCGUuuaCGUGCCCGa-- -3' miRNA: 3'- -CCGCCGC-CuUCGCGc--GCGCGGGCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 50281 | 0.67 | 0.539579 |
Target: 5'- cGGCacauGCGGAugcGGCGCuugccguucaccGUGCGCUCGUAGc -3' miRNA: 3'- -CCGc---CGCCU---UCGCG------------CGCGCGGGCAUU- -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 97208 | 0.67 | 0.549102 |
Target: 5'- cGCGuuaGAGGCGCGCGUGCCCc--- -3' miRNA: 3'- cCGCcgcCUUCGCGCGCGCGGGcauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 109129 | 0.67 | 0.549102 |
Target: 5'- cGGCGGCGGccucuuGgGCGC-CGCCuCGa-- -3' miRNA: 3'- -CCGCCGCCuu----CgCGCGcGCGG-GCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 21755 | 0.66 | 0.577961 |
Target: 5'- uGGCGcGCauuuauaAAGCGCGCGCGCUCu--- -3' miRNA: 3'- -CCGC-CGcc-----UUCGCGCGCGCGGGcauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 135935 | 0.66 | 0.577961 |
Target: 5'- cGCGGCGauGGCGCGCcaaguGCGCCaaGUGg -3' miRNA: 3'- cCGCCGCcuUCGCGCG-----CGCGGg-CAUu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 102633 | 0.66 | 0.577961 |
Target: 5'- cGCGGCcacGGCGCGCgacuggcaaacGCGCUCGUGc -3' miRNA: 3'- cCGCCGccuUCGCGCG-----------CGCGGGCAUu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 94286 | 0.66 | 0.577961 |
Target: 5'- aGGCGccgaGGGaaGGCG-GCGCGCCCGc-- -3' miRNA: 3'- -CCGCcg--CCU--UCGCgCGCGCGGGCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 157735 | 0.66 | 0.577961 |
Target: 5'- --aGGUGGAgcgcGGUGCGCGCGCUgcacucuuUGUGAa -3' miRNA: 3'- ccgCCGCCU----UCGCGCGCGCGG--------GCAUU- -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 95074 | 0.67 | 0.568299 |
Target: 5'- gGGCaGCuucGAGGCGCuGCaGCGCUCGUGc -3' miRNA: 3'- -CCGcCGc--CUUCGCG-CG-CGCGGGCAUu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 72830 | 0.67 | 0.558677 |
Target: 5'- aGGcCGGCGGccGC-CGCGCaGUCCGa-- -3' miRNA: 3'- -CC-GCCGCCuuCGcGCGCG-CGGGCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 46379 | 0.67 | 0.557717 |
Target: 5'- cGGUGGUuccugagGGAuuugcGGCGCGCGCGCgaCGa-- -3' miRNA: 3'- -CCGCCG-------CCU-----UCGCGCGCGCGg-GCauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 115821 | 0.67 | 0.549102 |
Target: 5'- cGUGGUGGAgaacaAGCGCGUcgacaaccuguGCGCCCu--- -3' miRNA: 3'- cCGCCGCCU-----UCGCGCG-----------CGCGGGcauu -5' |
|||||||
7728 | 3' | -62.9 | NC_001973.1 | + | 111248 | 0.67 | 0.549102 |
Target: 5'- gGGCGaGgGGGucgacGCGgaCGCGCuGCCCGUGGg -3' miRNA: 3'- -CCGC-CgCCUu----CGC--GCGCG-CGGGCAUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home