miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 34969 0.66 0.587659
Target:  5'- cGCGcucaCGGAcgaGGUGUGCGUGCCCGc-- -3'
miRNA:   3'- cCGCc---GCCU---UCGCGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 77354 0.66 0.587659
Target:  5'- cGCGGCacaccGAcGCGgcCGCGCGCCCGc-- -3'
miRNA:   3'- cCGCCGc----CUuCGC--GCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 106787 0.66 0.587659
Target:  5'- uGGUGauuGCGGAGccccccGCGCcCGCGCCCGc-- -3'
miRNA:   3'- -CCGC---CGCCUU------CGCGcGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 16925 0.66 0.581837
Target:  5'- cGGCGGCGcagcaaaaaGAAGgGCGUuuccgcgaagcggccGUGCCCGa-- -3'
miRNA:   3'- -CCGCCGC---------CUUCgCGCG---------------CGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 94286 0.66 0.577961
Target:  5'- aGGCGccgaGGGaaGGCG-GCGCGCCCGc-- -3'
miRNA:   3'- -CCGCcg--CCU--UCGCgCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 102633 0.66 0.577961
Target:  5'- cGCGGCcacGGCGCGCgacuggcaaacGCGCUCGUGc -3'
miRNA:   3'- cCGCCGccuUCGCGCG-----------CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 135935 0.66 0.577961
Target:  5'- cGCGGCGauGGCGCGCcaaguGCGCCaaGUGg -3'
miRNA:   3'- cCGCCGCcuUCGCGCG-----CGCGGg-CAUu -5'
7728 3' -62.9 NC_001973.1 + 21755 0.66 0.577961
Target:  5'- uGGCGcGCauuuauaAAGCGCGCGCGCUCu--- -3'
miRNA:   3'- -CCGC-CGcc-----UUCGCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 45660 0.66 0.577961
Target:  5'- cGCGGCcugcgcgucucGGAuucGCGCGUGgGCgCCGUGc -3'
miRNA:   3'- cCGCCG-----------CCUu--CGCGCGCgCG-GGCAUu -5'
7728 3' -62.9 NC_001973.1 + 118115 0.66 0.577961
Target:  5'- cGCGGCgcucaagcaGGuGGCGCGCGaGCCCa--- -3'
miRNA:   3'- cCGCCG---------CCuUCGCGCGCgCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 157735 0.66 0.577961
Target:  5'- --aGGUGGAgcgcGGUGCGCGCGCUgcacucuuUGUGAa -3'
miRNA:   3'- ccgCCGCCU----UCGCGCGCGCGG--------GCAUU- -5'
7728 3' -62.9 NC_001973.1 + 95074 0.67 0.568299
Target:  5'- gGGCaGCuucGAGGCGCuGCaGCGCUCGUGc -3'
miRNA:   3'- -CCGcCGc--CUUCGCG-CG-CGCGGGCAUu -5'
7728 3' -62.9 NC_001973.1 + 72830 0.67 0.558677
Target:  5'- aGGcCGGCGGccGC-CGCGCaGUCCGa-- -3'
miRNA:   3'- -CC-GCCGCCuuCGcGCGCG-CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 46379 0.67 0.557717
Target:  5'- cGGUGGUuccugagGGAuuugcGGCGCGCGCGCgaCGa-- -3'
miRNA:   3'- -CCGCCG-------CCU-----UCGCGCGCGCGg-GCauu -5'
7728 3' -62.9 NC_001973.1 + 115821 0.67 0.549102
Target:  5'- cGUGGUGGAgaacaAGCGCGUcgacaaccuguGCGCCCu--- -3'
miRNA:   3'- cCGCCGCCU-----UCGCGCG-----------CGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 111248 0.67 0.549102
Target:  5'- gGGCGaGgGGGucgacGCGgaCGCGCuGCCCGUGGg -3'
miRNA:   3'- -CCGC-CgCCUu----CGC--GCGCG-CGGGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 109129 0.67 0.549102
Target:  5'- cGGCGGCGGccucuuGgGCGC-CGCCuCGa-- -3'
miRNA:   3'- -CCGCCGCCuu----CgCGCGcGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 97208 0.67 0.549102
Target:  5'- cGCGuuaGAGGCGCGCGUGCCCc--- -3'
miRNA:   3'- cCGCcgcCUUCGCGCGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 158754 0.67 0.539579
Target:  5'- -cCGGCGaccGAGCGCGCGCcgaccuacacGCCCGa-- -3'
miRNA:   3'- ccGCCGCc--UUCGCGCGCG----------CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 138439 0.67 0.539579
Target:  5'- cGCGcGCGGAaaGGCGCGCGUcagaugcuCCCGa-- -3'
miRNA:   3'- cCGC-CGCCU--UCGCGCGCGc-------GGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.