miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 5' -50.8 NC_001973.1 + 3874 0.66 0.996165
Target:  5'- gACGAUcgucAGCUCGGCgaccgaggcgucGCUCUgcGCCGg -3'
miRNA:   3'- gUGCUAc---UUGAGCUG------------CGAGAaaCGGC- -5'
7728 5' -50.8 NC_001973.1 + 28713 0.66 0.995513
Target:  5'- gGCGAUGAGCcgCGACaGCUUcucGUCGa -3'
miRNA:   3'- gUGCUACUUGa-GCUG-CGAGaaaCGGC- -5'
7728 5' -50.8 NC_001973.1 + 7444 0.66 0.994286
Target:  5'- gCACG-UGAGCUCGGCGgUgCggcgcgacgaggacuUUUGCCGc -3'
miRNA:   3'- -GUGCuACUUGAGCUGCgA-G---------------AAACGGC- -5'
7728 5' -50.8 NC_001973.1 + 72344 0.67 0.991952
Target:  5'- -cCGAUGAcaucaucccuaACUCGA-GCUCg--GCCGa -3'
miRNA:   3'- guGCUACU-----------UGAGCUgCGAGaaaCGGC- -5'
7728 5' -50.8 NC_001973.1 + 36227 0.67 0.988036
Target:  5'- aCACGGUcucgccGGACgCGAgGCUCgagGCCGa -3'
miRNA:   3'- -GUGCUA------CUUGaGCUgCGAGaaaCGGC- -5'
7728 5' -50.8 NC_001973.1 + 118106 0.68 0.984699
Target:  5'- gACGGUGGGCgCGGCGCUCaagcaggUGgCGc -3'
miRNA:   3'- gUGCUACUUGaGCUGCGAGaa-----ACgGC- -5'
7728 5' -50.8 NC_001973.1 + 53931 0.68 0.982786
Target:  5'- cCACGGUGAGCUCGuccacgugcccGCGCUUgaUGaaGg -3'
miRNA:   3'- -GUGCUACUUGAGC-----------UGCGAGaaACggC- -5'
7728 5' -50.8 NC_001973.1 + 91576 0.7 0.956731
Target:  5'- uCGCGAUGAGCUUuugaaACGCUCgaucGCCu -3'
miRNA:   3'- -GUGCUACUUGAGc----UGCGAGaaa-CGGc -5'
7728 5' -50.8 NC_001973.1 + 2670 0.7 0.948479
Target:  5'- uCACGcccGAGCUCGA-GCUCg--GCCGa -3'
miRNA:   3'- -GUGCua-CUUGAGCUgCGAGaaaCGGC- -5'
7728 5' -50.8 NC_001973.1 + 82657 0.7 0.948479
Target:  5'- gCACGAUcGACUCGAUGagUCgucagUGCCGa -3'
miRNA:   3'- -GUGCUAcUUGAGCUGCg-AGaa---ACGGC- -5'
7728 5' -50.8 NC_001973.1 + 9091 0.71 0.927931
Target:  5'- cCGCG-UGAGCUCGGCGCgcauccgcGCCGc -3'
miRNA:   3'- -GUGCuACUUGAGCUGCGagaaa---CGGC- -5'
7728 5' -50.8 NC_001973.1 + 86495 1 0.037687
Target:  5'- aCACGAUGAACUCGACGCUCUUguccGCCGa -3'
miRNA:   3'- -GUGCUACUUGAGCUGCGAGAAa---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.