Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7728 | 5' | -50.8 | NC_001973.1 | + | 86495 | 1 | 0.037687 |
Target: 5'- aCACGAUGAACUCGACGCUCUUguccGCCGa -3' miRNA: 3'- -GUGCUACUUGAGCUGCGAGAAa---CGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 9091 | 0.71 | 0.927931 |
Target: 5'- cCGCG-UGAGCUCGGCGCgcauccgcGCCGc -3' miRNA: 3'- -GUGCuACUUGAGCUGCGagaaa---CGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 82657 | 0.7 | 0.948479 |
Target: 5'- gCACGAUcGACUCGAUGagUCgucagUGCCGa -3' miRNA: 3'- -GUGCUAcUUGAGCUGCg-AGaa---ACGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 2670 | 0.7 | 0.948479 |
Target: 5'- uCACGcccGAGCUCGA-GCUCg--GCCGa -3' miRNA: 3'- -GUGCua-CUUGAGCUgCGAGaaaCGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 91576 | 0.7 | 0.956731 |
Target: 5'- uCGCGAUGAGCUUuugaaACGCUCgaucGCCu -3' miRNA: 3'- -GUGCUACUUGAGc----UGCGAGaaa-CGGc -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 53931 | 0.68 | 0.982786 |
Target: 5'- cCACGGUGAGCUCGuccacgugcccGCGCUUgaUGaaGg -3' miRNA: 3'- -GUGCUACUUGAGC-----------UGCGAGaaACggC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 118106 | 0.68 | 0.984699 |
Target: 5'- gACGGUGGGCgCGGCGCUCaagcaggUGgCGc -3' miRNA: 3'- gUGCUACUUGaGCUGCGAGaa-----ACgGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 36227 | 0.67 | 0.988036 |
Target: 5'- aCACGGUcucgccGGACgCGAgGCUCgagGCCGa -3' miRNA: 3'- -GUGCUA------CUUGaGCUgCGAGaaaCGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 72344 | 0.67 | 0.991952 |
Target: 5'- -cCGAUGAcaucaucccuaACUCGA-GCUCg--GCCGa -3' miRNA: 3'- guGCUACU-----------UGAGCUgCGAGaaaCGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 7444 | 0.66 | 0.994286 |
Target: 5'- gCACG-UGAGCUCGGCGgUgCggcgcgacgaggacuUUUGCCGc -3' miRNA: 3'- -GUGCuACUUGAGCUGCgA-G---------------AAACGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 28713 | 0.66 | 0.995513 |
Target: 5'- gGCGAUGAGCcgCGACaGCUUcucGUCGa -3' miRNA: 3'- gUGCUACUUGa-GCUG-CGAGaaaCGGC- -5' |
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7728 | 5' | -50.8 | NC_001973.1 | + | 3874 | 0.66 | 0.996165 |
Target: 5'- gACGAUcgucAGCUCGGCgaccgaggcgucGCUCUgcGCCGg -3' miRNA: 3'- gUGCUAc---UUGAGCUG------------CGAGAaaCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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