miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7732 3' -60.6 NC_001973.1 + 122446 0.66 0.773844
Target:  5'- ---gGCGAUAGuCGUcaaaaucgucgaCGCGCUCGUCGu -3'
miRNA:   3'- gccaCGCUGUC-GCG------------GCGCGAGCAGCu -5'
7732 3' -60.6 NC_001973.1 + 6116 0.66 0.773844
Target:  5'- aCGGcgcGCGAgGGCGCCGCGauaCGcCGc -3'
miRNA:   3'- -GCCa--CGCUgUCGCGGCGCga-GCaGCu -5'
7732 3' -60.6 NC_001973.1 + 10758 0.66 0.773844
Target:  5'- ---gGCGGguGCGCgaCGgGCUCGUCGu -3'
miRNA:   3'- gccaCGCUguCGCG--GCgCGAGCAGCu -5'
7732 3' -60.6 NC_001973.1 + 120948 0.66 0.772947
Target:  5'- gCGGUcugcacgGCGGcCAGCGCgGCGguuugcgCGUCGAu -3'
miRNA:   3'- -GCCA-------CGCU-GUCGCGgCGCga-----GCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 81082 0.66 0.764829
Target:  5'- aGGU-CGAUGGCGUucgcgcugggcgCGgGCUCGUUGAa -3'
miRNA:   3'- gCCAcGCUGUCGCG------------GCgCGAGCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 30403 0.66 0.764829
Target:  5'- gCGGcgGCGGCggaGGCGCCGCGaacUGcCGAc -3'
miRNA:   3'- -GCCa-CGCUG---UCGCGGCGCga-GCaGCU- -5'
7732 3' -60.6 NC_001973.1 + 96583 0.66 0.764829
Target:  5'- gCGGUgGCGGCGGCGCUG-GCgaCGaCGGc -3'
miRNA:   3'- -GCCA-CGCUGUCGCGGCgCGa-GCaGCU- -5'
7732 3' -60.6 NC_001973.1 + 110211 0.66 0.764829
Target:  5'- ---cGCGcAgAGCGCCuCGCUgGUCGAg -3'
miRNA:   3'- gccaCGC-UgUCGCGGcGCGAgCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 124303 0.66 0.764829
Target:  5'- uGGUaCGuCGGCgGCaCGCGCUCGagCGAg -3'
miRNA:   3'- gCCAcGCuGUCG-CG-GCGCGAGCa-GCU- -5'
7732 3' -60.6 NC_001973.1 + 51838 0.66 0.755706
Target:  5'- uGGUGCGuCuGUGCgagcuggGCGC-CGUCGAg -3'
miRNA:   3'- gCCACGCuGuCGCGg------CGCGaGCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 99023 0.66 0.755706
Target:  5'- uGGgccGCGACAcguucgccCGCCGgGCUCGaaUCGAg -3'
miRNA:   3'- gCCa--CGCUGUc-------GCGGCgCGAGC--AGCU- -5'
7732 3' -60.6 NC_001973.1 + 133484 0.66 0.755706
Target:  5'- gCGG-GCGAgCAcgcucGCGCCGUccacgcucgGCUUGUCGGg -3'
miRNA:   3'- -GCCaCGCU-GU-----CGCGGCG---------CGAGCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 146063 0.66 0.755706
Target:  5'- uGG-GCcGCGGCGCCGagccgGCUCGggCGGg -3'
miRNA:   3'- gCCaCGcUGUCGCGGCg----CGAGCa-GCU- -5'
7732 3' -60.6 NC_001973.1 + 8414 0.66 0.750184
Target:  5'- gGGcGCGaACGGCaagagccgccgcgucGUCGCGCcCGUCGAc -3'
miRNA:   3'- gCCaCGC-UGUCG---------------CGGCGCGaGCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 14021 0.66 0.746484
Target:  5'- gCGGgcgGCGuCGGCGUCGCGUUUG-Cu- -3'
miRNA:   3'- -GCCa--CGCuGUCGCGGCGCGAGCaGcu -5'
7732 3' -60.6 NC_001973.1 + 59351 0.66 0.746484
Target:  5'- gCGGUGCuGGCGGCcCaCGCGCUCa---- -3'
miRNA:   3'- -GCCACG-CUGUCGcG-GCGCGAGcagcu -5'
7732 3' -60.6 NC_001973.1 + 16131 0.66 0.746484
Target:  5'- aCGG-GCGAgCAcGCGCCGCuacaGCauUCGUCGc -3'
miRNA:   3'- -GCCaCGCU-GU-CGCGGCG----CG--AGCAGCu -5'
7732 3' -60.6 NC_001973.1 + 81182 0.66 0.746484
Target:  5'- uCGGgucgGCGGCGGCGaCgGUGUUgGUCa- -3'
miRNA:   3'- -GCCa---CGCUGUCGC-GgCGCGAgCAGcu -5'
7732 3' -60.6 NC_001973.1 + 132443 0.66 0.736232
Target:  5'- uGGUGgaggcgcCGGCggGGCGCgGC-CUCGUCGGg -3'
miRNA:   3'- gCCAC-------GCUG--UCGCGgCGcGAGCAGCU- -5'
7732 3' -60.6 NC_001973.1 + 113585 0.66 0.72777
Target:  5'- cCGGUGC--CGGCGCUGCcGCUCa-CGAa -3'
miRNA:   3'- -GCCACGcuGUCGCGGCG-CGAGcaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.