miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7732 5' -57.2 NC_001973.1 + 43718 0.66 0.883777
Target:  5'- -uUCGGUGAGGAa-GCGCUGcucgauggcGACCGc -3'
miRNA:   3'- ccAGCCACUUCUgcCGCGAC---------CUGGUu -5'
7732 5' -57.2 NC_001973.1 + 144750 0.66 0.876778
Target:  5'- aGG-CGGccgaGGAGGCGGCGCgcgaGGACa-- -3'
miRNA:   3'- -CCaGCCa---CUUCUGCCGCGa---CCUGguu -5'
7732 5' -57.2 NC_001973.1 + 53503 0.66 0.869565
Target:  5'- cGGUCGGUGuuGuacACGGCcGCgccgucGGGCCu- -3'
miRNA:   3'- -CCAGCCACuuC---UGCCG-CGa-----CCUGGuu -5'
7732 5' -57.2 NC_001973.1 + 122565 0.66 0.846693
Target:  5'- uGGUggUGGUGGccGGACgGGCGCcGGuCCGAa -3'
miRNA:   3'- -CCA--GCCACU--UCUG-CCGCGaCCuGGUU- -5'
7732 5' -57.2 NC_001973.1 + 86105 0.67 0.822106
Target:  5'- uGUCuGUG-AGAUGGCGCUuucucaacucGGACCGc -3'
miRNA:   3'- cCAGcCACuUCUGCCGCGA----------CCUGGUu -5'
7732 5' -57.2 NC_001973.1 + 122643 0.68 0.795103
Target:  5'- cGUCGGUcGAGagagcaccugaacGCGGCGCcgucGGGCCAGa -3'
miRNA:   3'- cCAGCCAcUUC-------------UGCCGCGa---CCUGGUU- -5'
7732 5' -57.2 NC_001973.1 + 28990 0.69 0.740097
Target:  5'- aGUCGGgGAAGGgcgcCGGCgGCUGGGCaCAGc -3'
miRNA:   3'- cCAGCCaCUUCU----GCCG-CGACCUG-GUU- -5'
7732 5' -57.2 NC_001973.1 + 146103 0.69 0.690894
Target:  5'- aGGUCGGgcc--GCGGCGCUGaGCCGg -3'
miRNA:   3'- -CCAGCCacuucUGCCGCGACcUGGUu -5'
7732 5' -57.2 NC_001973.1 + 81184 0.71 0.620221
Target:  5'- gGGUCGGcggcGgcGACGGUGUUGGucagcGCCAAg -3'
miRNA:   3'- -CCAGCCa---CuuCUGCCGCGACC-----UGGUU- -5'
7732 5' -57.2 NC_001973.1 + 96583 0.72 0.549939
Target:  5'- --gCGGUGgcGGCGGCGCUGGcgaCGAc -3'
miRNA:   3'- ccaGCCACuuCUGCCGCGACCug-GUU- -5'
7732 5' -57.2 NC_001973.1 + 83486 1.08 0.002736
Target:  5'- uGGUCGGUGAAGACGGCGCUGGACCAAa -3'
miRNA:   3'- -CCAGCCACUUCUGCCGCGACCUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.