miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7738 5' -58.6 NC_001973.1 + 61108 0.66 0.850446
Target:  5'- ---gACGGAgcaGcGGCGgCGGGgcgCGGCg -3'
miRNA:   3'- uucaUGCCUag-C-CCGCaGCCCa--GCCG- -5'
7738 5' -58.6 NC_001973.1 + 74974 0.66 0.834706
Target:  5'- cAGaACGGGgggcagCGGGUGcUCGGcGUUGGUg -3'
miRNA:   3'- uUCaUGCCUa-----GCCCGC-AGCC-CAGCCG- -5'
7738 5' -58.6 NC_001973.1 + 146076 0.66 0.824098
Target:  5'- cGAGc-CGGcUCGGGCGggcggggacuaaggUCGGGccgCGGCg -3'
miRNA:   3'- -UUCauGCCuAGCCCGC--------------AGCCCa--GCCG- -5'
7738 5' -58.6 NC_001973.1 + 89624 0.66 0.818269
Target:  5'- -cGUGCGGcuUCGcGCGUUGGuuuuuuuucagcGUCGGCa -3'
miRNA:   3'- uuCAUGCCu-AGCcCGCAGCC------------CAGCCG- -5'
7738 5' -58.6 NC_001973.1 + 44441 0.67 0.792435
Target:  5'- ---aACGGGcgcUCGGGCG-CGGGcgcUCGGg -3'
miRNA:   3'- uucaUGCCU---AGCCCGCaGCCC---AGCCg -5'
7738 5' -58.6 NC_001973.1 + 55898 0.67 0.78354
Target:  5'- cAGgcuCGGGcUCGGGC-UCGGGcUCGGg -3'
miRNA:   3'- uUCau-GCCU-AGCCCGcAGCCC-AGCCg -5'
7738 5' -58.6 NC_001973.1 + 73189 0.67 0.78354
Target:  5'- ---aACGGAUCGaacagaGGCuUCGcGGUCGGUa -3'
miRNA:   3'- uucaUGCCUAGC------CCGcAGC-CCAGCCG- -5'
7738 5' -58.6 NC_001973.1 + 28941 0.67 0.774516
Target:  5'- ---cGCGGcUgGGGCGgcagCGGGggcCGGCa -3'
miRNA:   3'- uucaUGCCuAgCCCGCa---GCCCa--GCCG- -5'
7738 5' -58.6 NC_001973.1 + 122611 0.68 0.746755
Target:  5'- gGAGgcgucgGCGGcgccgacgCGGGCGcCGGcGUCGGUc -3'
miRNA:   3'- -UUCa-----UGCCua------GCCCGCaGCC-CAGCCG- -5'
7738 5' -58.6 NC_001973.1 + 56413 0.68 0.717174
Target:  5'- cGAGcuCGGuAUCGGGC-UCGGGgcuaaacUCGGCg -3'
miRNA:   3'- -UUCauGCC-UAGCCCGcAGCCC-------AGCCG- -5'
7738 5' -58.6 NC_001973.1 + 134983 0.7 0.629425
Target:  5'- cGAGUACGuc-CGGGcCGUCGGG-CGGg -3'
miRNA:   3'- -UUCAUGCcuaGCCC-GCAGCCCaGCCg -5'
7738 5' -58.6 NC_001973.1 + 30372 0.7 0.609536
Target:  5'- cGGcGCGGcgacUCGGGUG-CGGGcCGGCg -3'
miRNA:   3'- uUCaUGCCu---AGCCCGCaGCCCaGCCG- -5'
7738 5' -58.6 NC_001973.1 + 44474 0.74 0.413073
Target:  5'- ---aACGGGcgcUCGGGCG-CGGGcaUCGGCg -3'
miRNA:   3'- uucaUGCCU---AGCCCGCaGCCC--AGCCG- -5'
7738 5' -58.6 NC_001973.1 + 75581 0.74 0.404666
Target:  5'- gGAGcggACGGAgCGGGCGgagCGGGcggagCGGCa -3'
miRNA:   3'- -UUCa--UGCCUaGCCCGCa--GCCCa----GCCG- -5'
7738 5' -58.6 NC_001973.1 + 152389 0.74 0.396368
Target:  5'- cGGcGCGGG-CGGGCG-CGGGgCGGCg -3'
miRNA:   3'- uUCaUGCCUaGCCCGCaGCCCaGCCG- -5'
7738 5' -58.6 NC_001973.1 + 56513 0.74 0.395545
Target:  5'- cGGgGCGGGcucggcgccaagcUCGGGCGgggCGGGcUCGGCg -3'
miRNA:   3'- uUCaUGCCU-------------AGCCCGCa--GCCC-AGCCG- -5'
7738 5' -58.6 NC_001973.1 + 56459 0.74 0.395545
Target:  5'- cGGgGCGGGcucggcgccaagcUCGGGCGgggCGGGcUCGGCg -3'
miRNA:   3'- uUCaUGCCU-------------AGCCCGCa--GCCC-AGCCG- -5'
7738 5' -58.6 NC_001973.1 + 79707 0.75 0.334063
Target:  5'- ----cCGGcuUUGGcGCGUCGGGUCGGCa -3'
miRNA:   3'- uucauGCCu-AGCC-CGCAGCCCAGCCG- -5'
7738 5' -58.6 NC_001973.1 + 55944 0.76 0.311925
Target:  5'- uAGUACGGAcUCGGGCccguucuGUCGGGagaGGCg -3'
miRNA:   3'- uUCAUGCCU-AGCCCG-------CAGCCCag-CCG- -5'
7738 5' -58.6 NC_001973.1 + 81165 1.09 0.001816
Target:  5'- aAAGUACGGAUCGGGCGUCGGGUCGGCg -3'
miRNA:   3'- -UUCAUGCCUAGCCCGCAGCCCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.