miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7744 3' -64 NC_001973.1 + 109857 0.66 0.59933
Target:  5'- -cGCcgCCGCcGACgaggaCGCGGCGCG-CGGCg -3'
miRNA:   3'- cuCG--GGCGaCUG-----GCGCUGCGCcGCCG- -5'
7744 3' -64 NC_001973.1 + 76455 0.66 0.59933
Target:  5'- -cGCCuCGCcaagGACauggGCGGCuCGGCGGUg -3'
miRNA:   3'- cuCGG-GCGa---CUGg---CGCUGcGCCGCCG- -5'
7744 3' -64 NC_001973.1 + 73757 0.66 0.59933
Target:  5'- -cGCgCGCguacACCacCGACGCGGCGGg -3'
miRNA:   3'- cuCGgGCGac--UGGc-GCUGCGCCGCCg -5'
7744 3' -64 NC_001973.1 + 27868 0.66 0.59933
Target:  5'- ---nCCGC-GGCCGCgGGCGCgGGCGcGCu -3'
miRNA:   3'- cucgGGCGaCUGGCG-CUGCG-CCGC-CG- -5'
7744 3' -64 NC_001973.1 + 42922 0.66 0.589741
Target:  5'- -cGCUCGC-GACUGCauCGUGGCGGa -3'
miRNA:   3'- cuCGGGCGaCUGGCGcuGCGCCGCCg -5'
7744 3' -64 NC_001973.1 + 45637 0.66 0.589741
Target:  5'- -cGCUCGUcGAgCGCGGCGuCGuacGCGGCc -3'
miRNA:   3'- cuCGGGCGaCUgGCGCUGC-GC---CGCCG- -5'
7744 3' -64 NC_001973.1 + 144730 0.66 0.589741
Target:  5'- cGAGCgC-CaGGCgGCGGCGgaGGCGGCc -3'
miRNA:   3'- -CUCGgGcGaCUGgCGCUGCg-CCGCCG- -5'
7744 3' -64 NC_001973.1 + 122589 0.66 0.588783
Target:  5'- cGGUCCGaaucuuuGCUGCGGCGgaggcguCGGCGGCg -3'
miRNA:   3'- cUCGGGCgac----UGGCGCUGC-------GCCGCCG- -5'
7744 3' -64 NC_001973.1 + 118099 0.66 0.588783
Target:  5'- uGGGCgugaCGgUGGgCGCGGCGCucaagcaGGUGGCg -3'
miRNA:   3'- -CUCGg---GCgACUgGCGCUGCG-------CCGCCG- -5'
7744 3' -64 NC_001973.1 + 41826 0.66 0.580179
Target:  5'- cGAGCCCGac-ACCGaGcCGCGGCuGCu -3'
miRNA:   3'- -CUCGGGCgacUGGCgCuGCGCCGcCG- -5'
7744 3' -64 NC_001973.1 + 55427 0.66 0.580179
Target:  5'- -cGUCgGCggcggcgGGcCCGaCGGCGCGGCGGa -3'
miRNA:   3'- cuCGGgCGa------CU-GGC-GCUGCGCCGCCg -5'
7744 3' -64 NC_001973.1 + 61155 0.66 0.580179
Target:  5'- cGGCgCCGCU--CCGCGuCG-GGCGGUc -3'
miRNA:   3'- cUCG-GGCGAcuGGCGCuGCgCCGCCG- -5'
7744 3' -64 NC_001973.1 + 28271 0.66 0.580179
Target:  5'- --aCUCGCgaucucGCCGCGccuCGUGGCGGCc -3'
miRNA:   3'- cucGGGCGac----UGGCGCu--GCGCCGCCG- -5'
7744 3' -64 NC_001973.1 + 35074 0.66 0.580179
Target:  5'- cGGCgCCGacgUGaagcgguacGCCGCGugGCuGCGGCu -3'
miRNA:   3'- cUCG-GGCg--AC---------UGGCGCugCGcCGCCG- -5'
7744 3' -64 NC_001973.1 + 125323 0.66 0.57065
Target:  5'- -cGCCuCGCUGuaaaagucucuUCGCGGCGaCGGUGGa -3'
miRNA:   3'- cuCGG-GCGACu----------GGCGCUGC-GCCGCCg -5'
7744 3' -64 NC_001973.1 + 109438 0.66 0.57065
Target:  5'- cAGCCgguagagGCUGGCCGCGuucaggucgaGCGUGGCGa- -3'
miRNA:   3'- cUCGGg------CGACUGGCGC----------UGCGCCGCcg -5'
7744 3' -64 NC_001973.1 + 84109 0.66 0.57065
Target:  5'- aAGCgCGCgGAgaGCGACGCGGCc-- -3'
miRNA:   3'- cUCGgGCGaCUggCGCUGCGCCGccg -5'
7744 3' -64 NC_001973.1 + 78612 0.66 0.57065
Target:  5'- cGAGUCCGCggacgacgaGGCCGCGGgCGCucgaGGCg -3'
miRNA:   3'- -CUCGGGCGa--------CUGGCGCU-GCGccg-CCG- -5'
7744 3' -64 NC_001973.1 + 143087 0.66 0.569699
Target:  5'- -uGUCCGCaGACgucgcagugcuucUGCGGCGCGGaCGaGCa -3'
miRNA:   3'- cuCGGGCGaCUG-------------GCGCUGCGCC-GC-CG- -5'
7744 3' -64 NC_001973.1 + 6117 0.66 0.561159
Target:  5'- cGGCgCGCgaggGcGCCGCGAUacgccgccugGaCGGCGGCa -3'
miRNA:   3'- cUCGgGCGa---C-UGGCGCUG----------C-GCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.