Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7744 | 5' | -56.9 | NC_001973.1 | + | 63648 | 0.71 | 0.6213 |
|
Target: 5'- gGCGGCgcgccgGCCGCCUguuucgagGGAcacGACCGGUGCg -3' miRNA: 3'- -UGUCG------CGGCGGA--------CCUac-UUGGUCACG- -5' |
|||||||
| 7744 | 5' | -56.9 | NC_001973.1 | + | 94411 | 0.72 | 0.570547 |
|
Target: 5'- cGCGGCGCCGCCc----GGACCGGcgGCg -3' miRNA: 3'- -UGUCGCGGCGGaccuaCUUGGUCa-CG- -5' |
|||||||
| 7744 | 5' | -56.9 | NC_001973.1 | + | 7717 | 0.73 | 0.50821 |
|
Target: 5'- --cGCGCCGCCcgcccgacugacgcUGGAgc-ACCGGUGCg -3' miRNA: 3'- uguCGCGGCGG--------------ACCUacuUGGUCACG- -5' |
|||||||
| 7744 | 5' | -56.9 | NC_001973.1 | + | 109144 | 0.77 | 0.307696 |
|
Target: 5'- -gGGCGCCGCCUcGAcGAGCCGG-GCg -3' miRNA: 3'- ugUCGCGGCGGAcCUaCUUGGUCaCG- -5' |
|||||||
| 7744 | 5' | -56.9 | NC_001973.1 | + | 44740 | 0.82 | 0.155585 |
|
Target: 5'- cGCGGCGuCCGUguuCUGGAUGAACgCGGUGCc -3' miRNA: 3'- -UGUCGC-GGCG---GACCUACUUG-GUCACG- -5' |
|||||||
| 7744 | 5' | -56.9 | NC_001973.1 | + | 76251 | 1.11 | 0.001555 |
|
Target: 5'- uACAGCGCCGCCUGGAUGAACCAGUGCg -3' miRNA: 3'- -UGUCGCGGCGGACCUACUUGGUCACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home