miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7745 3' -56.6 NC_001973.1 + 75830 1.01 0.010663
Target:  5'- uUACGCGCACAUCACCACC-CCGACGGg -3'
miRNA:   3'- -AUGCGCGUGUAGUGGUGGaGGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 73756 0.78 0.282097
Target:  5'- -uCGCGCGCGUaCACCACCgacgCGGCGGg -3'
miRNA:   3'- auGCGCGUGUA-GUGGUGGag--GCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 71284 0.77 0.330775
Target:  5'- uUACGCGCGCAUCuggACCACCgaCGACGu -3'
miRNA:   3'- -AUGCGCGUGUAG---UGGUGGagGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 49758 0.77 0.361253
Target:  5'- gGCGCGCgACggCACCACCUUCcACGGc -3'
miRNA:   3'- aUGCGCG-UGuaGUGGUGGAGGcUGCC- -5'
7745 3' -56.6 NC_001973.1 + 82467 0.75 0.410512
Target:  5'- aUGCGCGC-CGUguCCGCCggcCCGAUGGa -3'
miRNA:   3'- -AUGCGCGuGUAguGGUGGa--GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 109840 0.75 0.445583
Target:  5'- cUGCGCuuccGCgGCGUCGCCGCCgCCGACGa -3'
miRNA:   3'- -AUGCG----CG-UGUAGUGGUGGaGGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 107343 0.75 0.454609
Target:  5'- aGCGCGCACGUCcacGCC-CC-CCGGCGu -3'
miRNA:   3'- aUGCGCGUGUAG---UGGuGGaGGCUGCc -5'
7745 3' -56.6 NC_001973.1 + 23783 0.74 0.463734
Target:  5'- cUACGCGCGCAUCgucgaguacgGCCACUUCuuCGGCGa -3'
miRNA:   3'- -AUGCGCGUGUAG----------UGGUGGAG--GCUGCc -5'
7745 3' -56.6 NC_001973.1 + 96613 0.74 0.48133
Target:  5'- gACGCGCACG--GCUACCUgucgcggCCGGCGGc -3'
miRNA:   3'- aUGCGCGUGUagUGGUGGA-------GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 128451 0.74 0.495447
Target:  5'- cGCGUGCACGgcguucaugcccugCGCUAUgUCCGACGGc -3'
miRNA:   3'- aUGCGCGUGUa-------------GUGGUGgAGGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 111722 0.74 0.510709
Target:  5'- cACgGCGCACcucaaaAUCACCACCgucagCuCGACGGa -3'
miRNA:   3'- aUG-CGCGUG------UAGUGGUGGa----G-GCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 41764 0.73 0.530054
Target:  5'- gACGUGCACGUCaaGCCGCUgcccgagaaCGGCGGg -3'
miRNA:   3'- aUGCGCGUGUAG--UGGUGGag-------GCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 5936 0.73 0.539827
Target:  5'- cGCGCGCACGaugCGCgACgCggCCGGCGGa -3'
miRNA:   3'- aUGCGCGUGUa--GUGgUG-Ga-GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 29234 0.73 0.549661
Target:  5'- cAgGCGCAgCAguugCACCACCUCguCGAUGGa -3'
miRNA:   3'- aUgCGCGU-GUa---GUGGUGGAG--GCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 111500 0.73 0.549661
Target:  5'- gGCGCGCgACAaCugCGCCgcggUCGACGGc -3'
miRNA:   3'- aUGCGCG-UGUaGugGUGGa---GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 139741 0.73 0.549661
Target:  5'- cGCGCGCGCAgcaCACCAUCaa-GACGGc -3'
miRNA:   3'- aUGCGCGUGUa--GUGGUGGaggCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 54664 0.72 0.56849
Target:  5'- cACGCGCGUGUCGCCcacgcccACCUcgCCGAUGGg -3'
miRNA:   3'- aUGCGCGUGUAGUGG-------UGGA--GGCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 28261 0.72 0.579466
Target:  5'- aGCGUGCGCAacucgcgaucUCGCCgcGCCUCgUGGCGGc -3'
miRNA:   3'- aUGCGCGUGU----------AGUGG--UGGAG-GCUGCC- -5'
7745 3' -56.6 NC_001973.1 + 1190 0.72 0.579466
Target:  5'- aGCGcCGCGCAUCugCAUCUUCuuCGGa -3'
miRNA:   3'- aUGC-GCGUGUAGugGUGGAGGcuGCC- -5'
7745 3' -56.6 NC_001973.1 + 7634 0.72 0.583469
Target:  5'- cUGCGCGCGC-UCGCCGCCagCGggcucuacuacgacuACGGg -3'
miRNA:   3'- -AUGCGCGUGuAGUGGUGGagGC---------------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.