miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7745 5' -62.9 NC_001973.1 + 98101 0.66 0.579838
Target:  5'- -aCCGUCaaGGCGGgaCGGUgGCGCACg -3'
miRNA:   3'- aaGGUAGgcCCGUCg-GUCGgCGCGUG- -5'
7745 5' -62.9 NC_001973.1 + 61163 0.66 0.579838
Target:  5'- cUCCGcgUCGGGCGGUC-GCCGaCGCu- -3'
miRNA:   3'- aAGGUa-GGCCCGUCGGuCGGC-GCGug -5'
7745 5' -62.9 NC_001973.1 + 28278 0.66 0.579838
Target:  5'- aUCUcgCCGcgccucguGGCGGCCGagcGCCGCGUcgGCg -3'
miRNA:   3'- aAGGuaGGC--------CCGUCGGU---CGGCGCG--UG- -5'
7745 5' -62.9 NC_001973.1 + 122992 0.66 0.570002
Target:  5'- -gCCGUCCaccGCGGCCAGCaugaGCGCc- -3'
miRNA:   3'- aaGGUAGGcc-CGUCGGUCGg---CGCGug -5'
7745 5' -62.9 NC_001973.1 + 27786 0.66 0.570002
Target:  5'- cUCCAgUUCGcGGCGGCUcGUCGCGCc- -3'
miRNA:   3'- aAGGU-AGGC-CCGUCGGuCGGCGCGug -5'
7745 5' -62.9 NC_001973.1 + 109231 0.66 0.560206
Target:  5'- gUCCAggUCCGGGauCAGCgAGCCG-GCu- -3'
miRNA:   3'- aAGGU--AGGCCC--GUCGgUCGGCgCGug -5'
7745 5' -62.9 NC_001973.1 + 28700 0.66 0.550458
Target:  5'- gUCCGUCCaGGuCGGCgaugAGCCGCGacaGCu -3'
miRNA:   3'- aAGGUAGGcCC-GUCGg---UCGGCGCg--UG- -5'
7745 5' -62.9 NC_001973.1 + 89057 0.66 0.540762
Target:  5'- aUCUcgaCGGGCAGCCGGUCcauGUGCAg -3'
miRNA:   3'- aAGGuagGCCCGUCGGUCGG---CGCGUg -5'
7745 5' -62.9 NC_001973.1 + 69921 0.66 0.531125
Target:  5'- -aCCAggccgCCGcGGCgcgugagcaGGCCccuGCCGCGCAUg -3'
miRNA:   3'- aaGGUa----GGC-CCG---------UCGGu--CGGCGCGUG- -5'
7745 5' -62.9 NC_001973.1 + 59900 0.67 0.512043
Target:  5'- --gCGgugUCGGccaacGCgAGCCAGCCGCGCGCc -3'
miRNA:   3'- aagGUa--GGCC-----CG-UCGGUCGGCGCGUG- -5'
7745 5' -62.9 NC_001973.1 + 26697 0.67 0.502609
Target:  5'- -gCCGcgCCGGGCAGUC-GCCuuuguCGCACa -3'
miRNA:   3'- aaGGUa-GGCCCGUCGGuCGGc----GCGUG- -5'
7745 5' -62.9 NC_001973.1 + 27847 0.67 0.502609
Target:  5'- -cCCGguuggCCGgcgcuGGCGGCCgcGGCCGCGgGCg -3'
miRNA:   3'- aaGGUa----GGC-----CCGUCGG--UCGGCGCgUG- -5'
7745 5' -62.9 NC_001973.1 + 133975 0.67 0.493251
Target:  5'- cUCCgacGUCUGGGUguAGCCgguGGCCGUGCucGCg -3'
miRNA:   3'- aAGG---UAGGCCCG--UCGG---UCGGCGCG--UG- -5'
7745 5' -62.9 NC_001973.1 + 23686 0.67 0.49232
Target:  5'- -gCC-UCCGcGCGucgacgcGCCAGCUGCGCGCc -3'
miRNA:   3'- aaGGuAGGCcCGU-------CGGUCGGCGCGUG- -5'
7745 5' -62.9 NC_001973.1 + 47790 0.67 0.474782
Target:  5'- gUCCAggCCGGcCGcGCCGGCCGaCGCGu -3'
miRNA:   3'- aAGGUa-GGCCcGU-CGGUCGGC-GCGUg -5'
7745 5' -62.9 NC_001973.1 + 126613 0.68 0.455768
Target:  5'- -gCCAUgCGGuuGGCCAGCUgagcgguuucucuGCGCGCg -3'
miRNA:   3'- aaGGUAgGCCcgUCGGUCGG-------------CGCGUG- -5'
7745 5' -62.9 NC_001973.1 + 18514 0.68 0.447746
Target:  5'- cUCCGUCguauauauaaCGGGCGuacggggcgcGCCGGCCGCauagGCGCc -3'
miRNA:   3'- aAGGUAG----------GCCCGU----------CGGUCGGCG----CGUG- -5'
7745 5' -62.9 NC_001973.1 + 45159 0.68 0.438925
Target:  5'- gUCCAcgggcgcgCCGaGCAGCCGGUCGaacaGCACg -3'
miRNA:   3'- aAGGUa-------GGCcCGUCGGUCGGCg---CGUG- -5'
7745 5' -62.9 NC_001973.1 + 14549 0.68 0.413073
Target:  5'- gUUCGUUCGa-CGGCCGGCCGgCGCACc -3'
miRNA:   3'- aAGGUAGGCccGUCGGUCGGC-GCGUG- -5'
7745 5' -62.9 NC_001973.1 + 107027 0.68 0.413073
Target:  5'- gUCUGU-CGGGCAagaagcucgcGUUGGCCGCGCACu -3'
miRNA:   3'- aAGGUAgGCCCGU----------CGGUCGGCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.