miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 41075 0.66 0.91357
Target:  5'- --aUCGAcCcCGGCcGGCGCGUAAGAu -3'
miRNA:   3'- uugAGCUcGaGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 29969 0.66 0.91357
Target:  5'- aGACgCcGGCUCGGUgguGGGCGCGUAu-- -3'
miRNA:   3'- -UUGaGcUCGAGCCG---CCUGCGCAUucu -5'
7749 3' -56 NC_001973.1 + 74211 0.66 0.901323
Target:  5'- ---aCGAGCUCGGCgucGGAgGCGUu--- -3'
miRNA:   3'- uugaGCUCGAGCCG---CCUgCGCAuucu -5'
7749 3' -56 NC_001973.1 + 34067 0.66 0.898761
Target:  5'- uGCUCGGugaugagcgccauCUUGGCGGugGCGUAgccgcAGAg -3'
miRNA:   3'- uUGAGCUc------------GAGCCGCCugCGCAU-----UCU- -5'
7749 3' -56 NC_001973.1 + 58037 0.66 0.888145
Target:  5'- -uCUCGGGCUcCGGCGG-CgGCGgcGGc -3'
miRNA:   3'- uuGAGCUCGA-GCCGCCuG-CGCauUCu -5'
7749 3' -56 NC_001973.1 + 30380 0.66 0.888145
Target:  5'- cGACUCGGGUgcgggccggcgCGGCGG-CGgCGgcGGAg -3'
miRNA:   3'- -UUGAGCUCGa----------GCCGCCuGC-GCauUCU- -5'
7749 3' -56 NC_001973.1 + 7260 0.67 0.881216
Target:  5'- uGCgcagCGGGCUCGGCGcgcGGCGCGc---- -3'
miRNA:   3'- uUGa---GCUCGAGCCGC---CUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 56504 0.67 0.874066
Target:  5'- aAGCUCGGGCggGGCGGGCuCGg---- -3'
miRNA:   3'- -UUGAGCUCGagCCGCCUGcGCauucu -5'
7749 3' -56 NC_001973.1 + 51469 0.67 0.866699
Target:  5'- gAGCUCGAGCggcCGGgucgaugcgcuCGGAUGaGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGa--GCC-----------GCCUGCgCAUUCU- -5'
7749 3' -56 NC_001973.1 + 55905 0.67 0.866699
Target:  5'- gGGCUCGGGCUCGGgcuCGGGCuCGg---- -3'
miRNA:   3'- -UUGAGCUCGAGCC---GCCUGcGCauucu -5'
7749 3' -56 NC_001973.1 + 56456 0.67 0.866699
Target:  5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UUGa---GCUCGAGCCG---------CCUGCgCauUCU- -5'
7749 3' -56 NC_001973.1 + 57133 0.67 0.859121
Target:  5'- cAGCUCGcAGUUgGGCGauuGCGCGUcGAGAa -3'
miRNA:   3'- -UUGAGC-UCGAgCCGCc--UGCGCA-UUCU- -5'
7749 3' -56 NC_001973.1 + 56531 0.67 0.859121
Target:  5'- aAGCUCGGGCggGGCGGGCucgGCGccGAGc -3'
miRNA:   3'- -UUGAGCUCGagCCGCCUG---CGCa-UUCu -5'
7749 3' -56 NC_001973.1 + 32577 0.67 0.859121
Target:  5'- --gUCG-GCUCGGCgcgcugcgacacGGACGCGaAGGAu -3'
miRNA:   3'- uugAGCuCGAGCCG------------CCUGCGCaUUCU- -5'
7749 3' -56 NC_001973.1 + 95762 0.67 0.851338
Target:  5'- --aUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3'
miRNA:   3'- uugAGCuCGAGCCG------------CCUGCGCau-UCU- -5'
7749 3' -56 NC_001973.1 + 71780 0.67 0.850548
Target:  5'- gAGCUCGAgGC-CGGCGGcgcccccgucgccGCucgaGCGUAAGAa -3'
miRNA:   3'- -UUGAGCU-CGaGCCGCC-------------UG----CGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 62577 0.68 0.835182
Target:  5'- gGGCUCGAGCg-GGCGcagcGACGCGUc--- -3'
miRNA:   3'- -UUGAGCUCGagCCGC----CUGCGCAuucu -5'
7749 3' -56 NC_001973.1 + 121696 0.68 0.826824
Target:  5'- uACgCGAGCUCGGCGGcgGCGuCGUc--- -3'
miRNA:   3'- uUGaGCUCGAGCCGCC--UGC-GCAuucu -5'
7749 3' -56 NC_001973.1 + 83950 0.68 0.800719
Target:  5'- cGCUCG-Ga--GGCGGGCGCGUcGAGGc -3'
miRNA:   3'- uUGAGCuCgagCCGCCUGCGCA-UUCU- -5'
7749 3' -56 NC_001973.1 + 41783 0.68 0.800719
Target:  5'- uGCcCGAGaaCGGCGGGCGCGaguGGGu -3'
miRNA:   3'- uUGaGCUCgaGCCGCCUGCGCau-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.