miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 67452 0.69 0.754279
Target:  5'- cAC-CGGGCUC-GCGGACGCGUcgaucAGAc -3'
miRNA:   3'- uUGaGCUCGAGcCGCCUGCGCAu----UCU- -5'
7749 3' -56 NC_001973.1 + 96887 0.69 0.754279
Target:  5'- gGAUcUGuGCgCGGCGGGCGCGUcGGAu -3'
miRNA:   3'- -UUGaGCuCGaGCCGCCUGCGCAuUCU- -5'
7749 3' -56 NC_001973.1 + 130473 0.69 0.782539
Target:  5'- gAACgCGAGUUguaguuauaGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGCUCGAgc-------CGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 2872 0.7 0.744631
Target:  5'- -cUUUGAucacGCUCGGCGGACGCGc---- -3'
miRNA:   3'- uuGAGCU----CGAGCCGCCUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 77014 0.71 0.685001
Target:  5'- --gUCGGGCggCGGCGGcGCGCGcAAGGa -3'
miRNA:   3'- uugAGCUCGa-GCCGCC-UGCGCaUUCU- -5'
7749 3' -56 NC_001973.1 + 159050 0.71 0.654472
Target:  5'- --gUCGAGCU-GGuCGGACGCGgaGGAc -3'
miRNA:   3'- uugAGCUCGAgCC-GCCUGCGCauUCU- -5'
7749 3' -56 NC_001973.1 + 89105 0.71 0.674856
Target:  5'- --gUCGAGCUCcGCGGGCGCGc---- -3'
miRNA:   3'- uugAGCUCGAGcCGCCUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 52726 0.72 0.613554
Target:  5'- cAGCUCGAGCgccaGGCGG-CGCGUc--- -3'
miRNA:   3'- -UUGAGCUCGag--CCGCCuGCGCAuucu -5'
7749 3' -56 NC_001973.1 + 52151 0.72 0.613554
Target:  5'- aAACUCGGGCagcCGGUGGGCGcCGUAc-- -3'
miRNA:   3'- -UUGAGCUCGa--GCCGCCUGC-GCAUucu -5'
7749 3' -56 NC_001973.1 + 144724 0.73 0.572855
Target:  5'- gGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGGAg -3'
miRNA:   3'- -UUG-AGCUCGa--------GCCGCCUgCGCa---UUCU- -5'
7749 3' -56 NC_001973.1 + 31039 0.73 0.558747
Target:  5'- uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGcGGAu -3'
miRNA:   3'- uUGAGCUCGa------------GCCGCCUG-CGCAU-UCU- -5'
7749 3' -56 NC_001973.1 + 7438 0.75 0.465472
Target:  5'- gGACUCgcacguGAGCUCGGCGGugcgGCGCGacgAGGAc -3'
miRNA:   3'- -UUGAG------CUCGAGCCGCC----UGCGCa--UUCU- -5'
7749 3' -56 NC_001973.1 + 132555 0.75 0.465472
Target:  5'- gGGCUCGAGCgCGGCGGugugGCGCGccguguauuuUAGGAa -3'
miRNA:   3'- -UUGAGCUCGaGCCGCC----UGCGC----------AUUCU- -5'
7749 3' -56 NC_001973.1 + 151313 0.75 0.465472
Target:  5'- ---aUGAGCg-GGCGGACGUGUAGGAc -3'
miRNA:   3'- uugaGCUCGagCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 42866 0.77 0.361465
Target:  5'- cAugUCGAGCgagCGGCGG-CGCGUGAu- -3'
miRNA:   3'- -UugAGCUCGa--GCCGCCuGCGCAUUcu -5'
7749 3' -56 NC_001973.1 + 126043 0.77 0.338111
Target:  5'- gAAUUUGAGCUCuGCcGACGCGUAAGAc -3'
miRNA:   3'- -UUGAGCUCGAGcCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127586 0.83 0.159863
Target:  5'- aAGCUCGAGCUCGGCGGuCGCcu-AGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCuGCGcauUCU- -5'
7749 3' -56 NC_001973.1 + 150899 0.84 0.133563
Target:  5'- ---aCGAGCUCGGCcGACGCGUAAGAu -3'
miRNA:   3'- uugaGCUCGAGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 96040 0.85 0.11728
Target:  5'- gAGCUCGGGCUgGGCGGucuguuCGCGUGGGAg -3'
miRNA:   3'- -UUGAGCUCGAgCCGCCu-----GCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12265 0.86 0.095031
Target:  5'- aAAC-CcAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGcUCGAGCCGCCUGCGCAUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.