Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 3' | -56 | NC_001973.1 | + | 128977 | 0.88 | 0.076819 |
Target: 5'- aAACUCGAGCUCGGCcaACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGccUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 2678 | 0.88 | 0.074792 |
Target: 5'- gAGCUCGAGCUCGGCcGACGCGUAAa- -3' miRNA: 3'- -UUGAGCUCGAGCCGcCUGCGCAUUcu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 72466 | 0.9 | 0.057158 |
Target: 5'- uAAC-CGAGCUCGGCGGACGCGUAAa- -3' miRNA: 3'- -UUGaGCUCGAGCCGCCUGCGCAUUcu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 12421 | 0.92 | 0.041275 |
Target: 5'- aAACUUGAGCUCGGCuGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGcCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 127509 | 0.93 | 0.034097 |
Target: 5'- aAACU-GAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 12187 | 0.94 | 0.028931 |
Target: 5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 20959 | 0.94 | 0.028931 |
Target: 5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 160461 | 0.94 | 0.028931 |
Target: 5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 2799 | 0.94 | 0.028931 |
Target: 5'- --aUUGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- uugAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 160539 | 0.95 | 0.026646 |
Target: 5'- aAACU-GAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 127353 | 0.95 | 0.026646 |
Target: 5'- aAACU-GAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 72360 | 0.95 | 0.025222 |
Target: 5'- uAACUCGAGCUCGGCcGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGcCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 129139 | 0.96 | 0.022596 |
Target: 5'- cGACUugaaCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGA----GCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 72204 | 0.96 | 0.022596 |
Target: 5'- gAAgUUGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUgAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130537 | 0.97 | 0.017635 |
Target: 5'- aAAC-CGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGaGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130615 | 0.97 | 0.019156 |
Target: 5'- aAAC-CGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGaGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 150953 | 1 | 0.012661 |
Target: 5'- aGACUCGAGCUCGGCGGACGCGUAAa- -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUcu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 151347 | 1.02 | 0.008131 |
Target: 5'- aGAUUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130771 | 1.05 | 0.00567 |
Target: 5'- aAACUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 21156 | 1.05 | 0.005515 |
Target: 5'- cGCUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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