Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 3' | -56 | NC_001973.1 | + | 21057 | 1.05 | 0.005515 |
Target: 5'- gAGCUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 21156 | 1.05 | 0.005515 |
Target: 5'- cGCUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130771 | 1.05 | 0.00567 |
Target: 5'- aAACUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 160794 | 1.05 | 0.00567 |
Target: 5'- aAGCUCGAGCUCGGCGGGCGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 71935 | 1.06 | 0.004541 |
Target: 5'- uAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 160617 | 1.06 | 0.004417 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 160382 | 1.06 | 0.004417 |
Target: 5'- aAGCUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130948 | 1.06 | 0.004417 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 129222 | 1.06 | 0.004417 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 127430 | 1.06 | 0.004417 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 72022 | 1.06 | 0.004417 |
Target: 5'- cAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 72282 | 1.06 | 0.004541 |
Target: 5'- uAACUCGAGCUCGGCGGACGCGUAAGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 12108 | 1.06 | 0.004801 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 12343 | 1.06 | 0.004801 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 16356 | 1.06 | 0.004801 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 129299 | 1.06 | 0.004801 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130693 | 1.06 | 0.004801 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 130869 | 1.06 | 0.004801 |
Target: 5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 72117 | 1.06 | 0.004936 |
Target: 5'- uAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 160695 | 1.06 | 0.004936 |
Target: 5'- uAACUCGAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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