miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 160695 1.06 0.004936
Target:  5'- uAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72022 1.06 0.004417
Target:  5'- cAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 151062 1.06 0.004296
Target:  5'- aGACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12108 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127430 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160382 1.06 0.004417
Target:  5'- aAGCUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130948 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 71935 1.06 0.004541
Target:  5'- uAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160617 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12343 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72282 1.06 0.004541
Target:  5'- uAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130693 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72117 1.06 0.004936
Target:  5'- uAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 16356 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 129299 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 129222 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130869 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130771 1.05 0.00567
Target:  5'- aAACUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 21156 1.05 0.005515
Target:  5'- cGCUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 16435 1.05 0.005075
Target:  5'- cGCUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.