miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 21156 1.05 0.005515
Target:  5'- cGCUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130771 1.05 0.00567
Target:  5'- aAACUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160794 1.05 0.00567
Target:  5'- aAGCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 151347 1.02 0.008131
Target:  5'- aGAUUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 150953 1 0.012661
Target:  5'- aGACUCGAGCUCGGCGGACGCGUAAa- -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUcu -5'
7749 3' -56 NC_001973.1 + 130615 0.97 0.019156
Target:  5'- aAAC-CGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130537 0.97 0.017635
Target:  5'- aAAC-CGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGaGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72204 0.96 0.022596
Target:  5'- gAAgUUGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUgAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 129139 0.96 0.022596
Target:  5'- cGACUugaaCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGA----GCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72360 0.95 0.025222
Target:  5'- uAACUCGAGCUCGGCcGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160539 0.95 0.026646
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127353 0.95 0.026646
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 20959 0.94 0.028931
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12187 0.94 0.028931
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160461 0.94 0.028931
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 2799 0.94 0.028931
Target:  5'- --aUUGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- uugAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127509 0.93 0.034097
Target:  5'- aAACU-GAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12421 0.92 0.041275
Target:  5'- aAACUUGAGCUCGGCuGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72466 0.9 0.057158
Target:  5'- uAAC-CGAGCUCGGCGGACGCGUAAa- -3'
miRNA:   3'- -UUGaGCUCGAGCCGCCUGCGCAUUcu -5'
7749 3' -56 NC_001973.1 + 2678 0.88 0.074792
Target:  5'- gAGCUCGAGCUCGGCcGACGCGUAAa- -3'
miRNA:   3'- -UUGAGCUCGAGCCGcCUGCGCAUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.