Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 3' | -56 | NC_001973.1 | + | 128977 | 0.88 | 0.076819 |
Target: 5'- aAACUCGAGCUCGGCcaACGCGUAGGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGccUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 12265 | 0.86 | 0.095031 |
Target: 5'- aAAC-CcAGCUCGGCGGACGCGUAGGAu -3' miRNA: 3'- -UUGaGcUCGAGCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 96040 | 0.85 | 0.11728 |
Target: 5'- gAGCUCGGGCUgGGCGGucuguuCGCGUGGGAg -3' miRNA: 3'- -UUGAGCUCGAgCCGCCu-----GCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 150899 | 0.84 | 0.133563 |
Target: 5'- ---aCGAGCUCGGCcGACGCGUAAGAu -3' miRNA: 3'- uugaGCUCGAGCCGcCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 127586 | 0.83 | 0.159863 |
Target: 5'- aAGCUCGAGCUCGGCGGuCGCcu-AGAu -3' miRNA: 3'- -UUGAGCUCGAGCCGCCuGCGcauUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 126043 | 0.77 | 0.338111 |
Target: 5'- gAAUUUGAGCUCuGCcGACGCGUAAGAc -3' miRNA: 3'- -UUGAGCUCGAGcCGcCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 42866 | 0.77 | 0.361465 |
Target: 5'- cAugUCGAGCgagCGGCGG-CGCGUGAu- -3' miRNA: 3'- -UugAGCUCGa--GCCGCCuGCGCAUUcu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 151313 | 0.75 | 0.465472 |
Target: 5'- ---aUGAGCg-GGCGGACGUGUAGGAc -3' miRNA: 3'- uugaGCUCGagCCGCCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 132555 | 0.75 | 0.465472 |
Target: 5'- gGGCUCGAGCgCGGCGGugugGCGCGccguguauuuUAGGAa -3' miRNA: 3'- -UUGAGCUCGaGCCGCC----UGCGC----------AUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 7438 | 0.75 | 0.465472 |
Target: 5'- gGACUCgcacguGAGCUCGGCGGugcgGCGCGacgAGGAc -3' miRNA: 3'- -UUGAG------CUCGAGCCGCC----UGCGCa--UUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 31039 | 0.73 | 0.558747 |
Target: 5'- uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGcGGAu -3' miRNA: 3'- uUGAGCUCGa------------GCCGCCUG-CGCAU-UCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 144724 | 0.73 | 0.572855 |
Target: 5'- gGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGGAg -3' miRNA: 3'- -UUG-AGCUCGa--------GCCGCCUgCGCa---UUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 52726 | 0.72 | 0.613554 |
Target: 5'- cAGCUCGAGCgccaGGCGG-CGCGUc--- -3' miRNA: 3'- -UUGAGCUCGag--CCGCCuGCGCAuucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 52151 | 0.72 | 0.613554 |
Target: 5'- aAACUCGGGCagcCGGUGGGCGcCGUAc-- -3' miRNA: 3'- -UUGAGCUCGa--GCCGCCUGC-GCAUucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 159050 | 0.71 | 0.654472 |
Target: 5'- --gUCGAGCU-GGuCGGACGCGgaGGAc -3' miRNA: 3'- uugAGCUCGAgCC-GCCUGCGCauUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 89105 | 0.71 | 0.674856 |
Target: 5'- --gUCGAGCUCcGCGGGCGCGc---- -3' miRNA: 3'- uugAGCUCGAGcCGCCUGCGCauucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 77014 | 0.71 | 0.685001 |
Target: 5'- --gUCGGGCggCGGCGGcGCGCGcAAGGa -3' miRNA: 3'- uugAGCUCGa-GCCGCC-UGCGCaUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 2872 | 0.7 | 0.744631 |
Target: 5'- -cUUUGAucacGCUCGGCGGACGCGc---- -3' miRNA: 3'- uuGAGCU----CGAGCCGCCUGCGCauucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 67452 | 0.69 | 0.754279 |
Target: 5'- cAC-CGGGCUC-GCGGACGCGUcgaucAGAc -3' miRNA: 3'- uUGaGCUCGAGcCGCCUGCGCAu----UCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 96887 | 0.69 | 0.754279 |
Target: 5'- gGAUcUGuGCgCGGCGGGCGCGUcGGAu -3' miRNA: 3'- -UUGaGCuCGaGCCGCCUGCGCAuUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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