Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 3' | -56 | NC_001973.1 | + | 41075 | 0.66 | 0.91357 |
Target: 5'- --aUCGAcCcCGGCcGGCGCGUAAGAu -3' miRNA: 3'- uugAGCUcGaGCCGcCUGCGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 29969 | 0.66 | 0.91357 |
Target: 5'- aGACgCcGGCUCGGUgguGGGCGCGUAu-- -3' miRNA: 3'- -UUGaGcUCGAGCCG---CCUGCGCAUucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 74211 | 0.66 | 0.901323 |
Target: 5'- ---aCGAGCUCGGCgucGGAgGCGUu--- -3' miRNA: 3'- uugaGCUCGAGCCG---CCUgCGCAuucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 34067 | 0.66 | 0.898761 |
Target: 5'- uGCUCGGugaugagcgccauCUUGGCGGugGCGUAgccgcAGAg -3' miRNA: 3'- uUGAGCUc------------GAGCCGCCugCGCAU-----UCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 58037 | 0.66 | 0.888145 |
Target: 5'- -uCUCGGGCUcCGGCGG-CgGCGgcGGc -3' miRNA: 3'- uuGAGCUCGA-GCCGCCuG-CGCauUCu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 30380 | 0.66 | 0.888145 |
Target: 5'- cGACUCGGGUgcgggccggcgCGGCGG-CGgCGgcGGAg -3' miRNA: 3'- -UUGAGCUCGa----------GCCGCCuGC-GCauUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 7260 | 0.67 | 0.881216 |
Target: 5'- uGCgcagCGGGCUCGGCGcgcGGCGCGc---- -3' miRNA: 3'- uUGa---GCUCGAGCCGC---CUGCGCauucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 56504 | 0.67 | 0.874066 |
Target: 5'- aAGCUCGGGCggGGCGGGCuCGg---- -3' miRNA: 3'- -UUGAGCUCGagCCGCCUGcGCauucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 51469 | 0.67 | 0.866699 |
Target: 5'- gAGCUCGAGCggcCGGgucgaugcgcuCGGAUGaGUAAGAu -3' miRNA: 3'- -UUGAGCUCGa--GCC-----------GCCUGCgCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 55905 | 0.67 | 0.866699 |
Target: 5'- gGGCUCGGGCUCGGgcuCGGGCuCGg---- -3' miRNA: 3'- -UUGAGCUCGAGCC---GCCUGcGCauucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 56456 | 0.67 | 0.866699 |
Target: 5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3' miRNA: 3'- -UUGa---GCUCGAGCCG---------CCUGCgCauUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 57133 | 0.67 | 0.859121 |
Target: 5'- cAGCUCGcAGUUgGGCGauuGCGCGUcGAGAa -3' miRNA: 3'- -UUGAGC-UCGAgCCGCc--UGCGCA-UUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 56531 | 0.67 | 0.859121 |
Target: 5'- aAGCUCGGGCggGGCGGGCucgGCGccGAGc -3' miRNA: 3'- -UUGAGCUCGagCCGCCUG---CGCa-UUCu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 32577 | 0.67 | 0.859121 |
Target: 5'- --gUCG-GCUCGGCgcgcugcgacacGGACGCGaAGGAu -3' miRNA: 3'- uugAGCuCGAGCCG------------CCUGCGCaUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 95762 | 0.67 | 0.851338 |
Target: 5'- --aUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3' miRNA: 3'- uugAGCuCGAGCCG------------CCUGCGCau-UCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 71780 | 0.67 | 0.850548 |
Target: 5'- gAGCUCGAgGC-CGGCGGcgcccccgucgccGCucgaGCGUAAGAa -3' miRNA: 3'- -UUGAGCU-CGaGCCGCC-------------UG----CGCAUUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 62577 | 0.68 | 0.835182 |
Target: 5'- gGGCUCGAGCg-GGCGcagcGACGCGUc--- -3' miRNA: 3'- -UUGAGCUCGagCCGC----CUGCGCAuucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 121696 | 0.68 | 0.826824 |
Target: 5'- uACgCGAGCUCGGCGGcgGCGuCGUc--- -3' miRNA: 3'- uUGaGCUCGAGCCGCC--UGC-GCAuucu -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 83950 | 0.68 | 0.800719 |
Target: 5'- cGCUCG-Ga--GGCGGGCGCGUcGAGGc -3' miRNA: 3'- uUGAGCuCgagCCGCCUGCGCA-UUCU- -5' |
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7749 | 3' | -56 | NC_001973.1 | + | 41783 | 0.68 | 0.800719 |
Target: 5'- uGCcCGAGaaCGGCGGGCGCGaguGGGu -3' miRNA: 3'- uUGaGCUCgaGCCGCCUGCGCau-UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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