miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 72282 1.06 0.004541
Target:  5'- uAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72360 0.95 0.025222
Target:  5'- uAACUCGAGCUCGGCcGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 72466 0.9 0.057158
Target:  5'- uAAC-CGAGCUCGGCGGACGCGUAAa- -3'
miRNA:   3'- -UUGaGCUCGAGCCGCCUGCGCAUUcu -5'
7749 3' -56 NC_001973.1 + 74211 0.66 0.901323
Target:  5'- ---aCGAGCUCGGCgucGGAgGCGUu--- -3'
miRNA:   3'- uugaGCUCGAGCCG---CCUgCGCAuucu -5'
7749 3' -56 NC_001973.1 + 77014 0.71 0.685001
Target:  5'- --gUCGGGCggCGGCGGcGCGCGcAAGGa -3'
miRNA:   3'- uugAGCUCGa-GCCGCC-UGCGCaUUCU- -5'
7749 3' -56 NC_001973.1 + 83950 0.68 0.800719
Target:  5'- cGCUCG-Ga--GGCGGGCGCGUcGAGGc -3'
miRNA:   3'- uUGAGCuCgagCCGCCUGCGCA-UUCU- -5'
7749 3' -56 NC_001973.1 + 89105 0.71 0.674856
Target:  5'- --gUCGAGCUCcGCGGGCGCGc---- -3'
miRNA:   3'- uugAGCUCGAGcCGCCUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 95762 0.67 0.851338
Target:  5'- --aUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3'
miRNA:   3'- uugAGCuCGAGCCG------------CCUGCGCau-UCU- -5'
7749 3' -56 NC_001973.1 + 96040 0.85 0.11728
Target:  5'- gAGCUCGGGCUgGGCGGucuguuCGCGUGGGAg -3'
miRNA:   3'- -UUGAGCUCGAgCCGCCu-----GCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 96887 0.69 0.754279
Target:  5'- gGAUcUGuGCgCGGCGGGCGCGUcGGAu -3'
miRNA:   3'- -UUGaGCuCGaGCCGCCUGCGCAuUCU- -5'
7749 3' -56 NC_001973.1 + 121696 0.68 0.826824
Target:  5'- uACgCGAGCUCGGCGGcgGCGuCGUc--- -3'
miRNA:   3'- uUGaGCUCGAGCCGCC--UGC-GCAuucu -5'
7749 3' -56 NC_001973.1 + 126043 0.77 0.338111
Target:  5'- gAAUUUGAGCUCuGCcGACGCGUAAGAc -3'
miRNA:   3'- -UUGAGCUCGAGcCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127353 0.95 0.026646
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127430 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127509 0.93 0.034097
Target:  5'- aAACU-GAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 127586 0.83 0.159863
Target:  5'- aAGCUCGAGCUCGGCGGuCGCcu-AGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCuGCGcauUCU- -5'
7749 3' -56 NC_001973.1 + 128977 0.88 0.076819
Target:  5'- aAACUCGAGCUCGGCcaACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGccUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 129139 0.96 0.022596
Target:  5'- cGACUugaaCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGA----GCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 129222 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 129299 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.