miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 130473 0.69 0.782539
Target:  5'- gAACgCGAGUUguaguuauaGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGCUCGAgc-------CGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130537 0.97 0.017635
Target:  5'- aAAC-CGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGaGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130615 0.97 0.019156
Target:  5'- aAAC-CGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130693 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130771 1.05 0.00567
Target:  5'- aAACUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130869 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 130948 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 132555 0.75 0.465472
Target:  5'- gGGCUCGAGCgCGGCGGugugGCGCGccguguauuuUAGGAa -3'
miRNA:   3'- -UUGAGCUCGaGCCGCC----UGCGC----------AUUCU- -5'
7749 3' -56 NC_001973.1 + 144724 0.73 0.572855
Target:  5'- gGACaUCGAGCgccaggcggCGGCGGAgGCGgccgAGGAg -3'
miRNA:   3'- -UUG-AGCUCGa--------GCCGCCUgCGCa---UUCU- -5'
7749 3' -56 NC_001973.1 + 150899 0.84 0.133563
Target:  5'- ---aCGAGCUCGGCcGACGCGUAAGAu -3'
miRNA:   3'- uugaGCUCGAGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 150953 1 0.012661
Target:  5'- aGACUCGAGCUCGGCGGACGCGUAAa- -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUcu -5'
7749 3' -56 NC_001973.1 + 151062 1.06 0.004296
Target:  5'- aGACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 151313 0.75 0.465472
Target:  5'- ---aUGAGCg-GGCGGACGUGUAGGAc -3'
miRNA:   3'- uugaGCUCGagCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 151347 1.02 0.008131
Target:  5'- aGAUUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 159050 0.71 0.654472
Target:  5'- --gUCGAGCU-GGuCGGACGCGgaGGAc -3'
miRNA:   3'- uugAGCUCGAgCC-GCCUGCGCauUCU- -5'
7749 3' -56 NC_001973.1 + 160382 1.06 0.004417
Target:  5'- aAGCUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160461 0.94 0.028931
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160539 0.95 0.026646
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160617 1.06 0.004417
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 160695 1.06 0.004936
Target:  5'- uAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.