miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 34067 0.66 0.898761
Target:  5'- uGCUCGGugaugagcgccauCUUGGCGGugGCGUAgccgcAGAg -3'
miRNA:   3'- uUGAGCUc------------GAGCCGCCugCGCAU-----UCU- -5'
7749 3' -56 NC_001973.1 + 32577 0.67 0.859121
Target:  5'- --gUCG-GCUCGGCgcgcugcgacacGGACGCGaAGGAu -3'
miRNA:   3'- uugAGCuCGAGCCG------------CCUGCGCaUUCU- -5'
7749 3' -56 NC_001973.1 + 31039 0.73 0.558747
Target:  5'- uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGcGGAu -3'
miRNA:   3'- uUGAGCUCGa------------GCCGCCUG-CGCAU-UCU- -5'
7749 3' -56 NC_001973.1 + 30380 0.66 0.888145
Target:  5'- cGACUCGGGUgcgggccggcgCGGCGG-CGgCGgcGGAg -3'
miRNA:   3'- -UUGAGCUCGa----------GCCGCCuGC-GCauUCU- -5'
7749 3' -56 NC_001973.1 + 29969 0.66 0.91357
Target:  5'- aGACgCcGGCUCGGUgguGGGCGCGUAu-- -3'
miRNA:   3'- -UUGaGcUCGAGCCG---CCUGCGCAUucu -5'
7749 3' -56 NC_001973.1 + 21156 1.05 0.005515
Target:  5'- cGCUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 21057 1.05 0.005515
Target:  5'- gAGCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 20959 0.94 0.028931
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 16513 1.05 0.005075
Target:  5'- cGCUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 16435 1.05 0.005075
Target:  5'- cGCUCGAGCUCGGCGGACGCGUAAGAu -3'
miRNA:   3'- uUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 16356 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12421 0.92 0.041275
Target:  5'- aAACUUGAGCUCGGCuGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGcCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12343 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12265 0.86 0.095031
Target:  5'- aAAC-CcAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGcUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12187 0.94 0.028931
Target:  5'- aAACU-GAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAgCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 12108 1.06 0.004801
Target:  5'- aAACUCGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGAGCUCGAGCCGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 7438 0.75 0.465472
Target:  5'- gGACUCgcacguGAGCUCGGCGGugcgGCGCGacgAGGAc -3'
miRNA:   3'- -UUGAG------CUCGAGCCGCC----UGCGCa--UUCU- -5'
7749 3' -56 NC_001973.1 + 7260 0.67 0.881216
Target:  5'- uGCgcagCGGGCUCGGCGcgcGGCGCGc---- -3'
miRNA:   3'- uUGa---GCUCGAGCCGC---CUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 2872 0.7 0.744631
Target:  5'- -cUUUGAucacGCUCGGCGGACGCGc---- -3'
miRNA:   3'- uuGAGCU----CGAGCCGCCUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 2799 0.94 0.028931
Target:  5'- --aUUGAGCUCGGCGGACGCGUAGGAu -3'
miRNA:   3'- uugAGCUCGAGCCGCCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.