miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7749 3' -56 NC_001973.1 + 30380 0.66 0.888145
Target:  5'- cGACUCGGGUgcgggccggcgCGGCGG-CGgCGgcGGAg -3'
miRNA:   3'- -UUGAGCUCGa----------GCCGCCuGC-GCauUCU- -5'
7749 3' -56 NC_001973.1 + 58037 0.66 0.888145
Target:  5'- -uCUCGGGCUcCGGCGG-CgGCGgcGGc -3'
miRNA:   3'- uuGAGCUCGA-GCCGCCuG-CGCauUCu -5'
7749 3' -56 NC_001973.1 + 34067 0.66 0.898761
Target:  5'- uGCUCGGugaugagcgccauCUUGGCGGugGCGUAgccgcAGAg -3'
miRNA:   3'- uUGAGCUc------------GAGCCGCCugCGCAU-----UCU- -5'
7749 3' -56 NC_001973.1 + 74211 0.66 0.901323
Target:  5'- ---aCGAGCUCGGCgucGGAgGCGUu--- -3'
miRNA:   3'- uugaGCUCGAGCCG---CCUgCGCAuucu -5'
7749 3' -56 NC_001973.1 + 29969 0.66 0.91357
Target:  5'- aGACgCcGGCUCGGUgguGGGCGCGUAu-- -3'
miRNA:   3'- -UUGaGcUCGAGCCG---CCUGCGCAUucu -5'
7749 3' -56 NC_001973.1 + 95762 0.67 0.851338
Target:  5'- --aUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3'
miRNA:   3'- uugAGCuCGAGCCG------------CCUGCGCau-UCU- -5'
7749 3' -56 NC_001973.1 + 71780 0.67 0.850548
Target:  5'- gAGCUCGAgGC-CGGCGGcgcccccgucgccGCucgaGCGUAAGAa -3'
miRNA:   3'- -UUGAGCU-CGaGCCGCC-------------UG----CGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 52726 0.72 0.613554
Target:  5'- cAGCUCGAGCgccaGGCGG-CGCGUc--- -3'
miRNA:   3'- -UUGAGCUCGag--CCGCCuGCGCAuucu -5'
7749 3' -56 NC_001973.1 + 52151 0.72 0.613554
Target:  5'- aAACUCGGGCagcCGGUGGGCGcCGUAc-- -3'
miRNA:   3'- -UUGAGCUCGa--GCCGCCUGC-GCAUucu -5'
7749 3' -56 NC_001973.1 + 89105 0.71 0.674856
Target:  5'- --gUCGAGCUCcGCGGGCGCGc---- -3'
miRNA:   3'- uugAGCUCGAGcCGCCUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 159050 0.71 0.654472
Target:  5'- --gUCGAGCU-GGuCGGACGCGgaGGAc -3'
miRNA:   3'- uugAGCUCGAgCC-GCCUGCGCauUCU- -5'
7749 3' -56 NC_001973.1 + 77014 0.71 0.685001
Target:  5'- --gUCGGGCggCGGCGGcGCGCGcAAGGa -3'
miRNA:   3'- uugAGCUCGa-GCCGCC-UGCGCaUUCU- -5'
7749 3' -56 NC_001973.1 + 2872 0.7 0.744631
Target:  5'- -cUUUGAucacGCUCGGCGGACGCGc---- -3'
miRNA:   3'- uuGAGCU----CGAGCCGCCUGCGCauucu -5'
7749 3' -56 NC_001973.1 + 67452 0.69 0.754279
Target:  5'- cAC-CGGGCUC-GCGGACGCGUcgaucAGAc -3'
miRNA:   3'- uUGaGCUCGAGcCGCCUGCGCAu----UCU- -5'
7749 3' -56 NC_001973.1 + 96887 0.69 0.754279
Target:  5'- gGAUcUGuGCgCGGCGGGCGCGUcGGAu -3'
miRNA:   3'- -UUGaGCuCGaGCCGCCUGCGCAuUCU- -5'
7749 3' -56 NC_001973.1 + 130473 0.69 0.782539
Target:  5'- gAACgCGAGUUguaguuauaGCGGACGCGUAGGAu -3'
miRNA:   3'- -UUGaGCUCGAgc-------CGCCUGCGCAUUCU- -5'
7749 3' -56 NC_001973.1 + 41783 0.68 0.800719
Target:  5'- uGCcCGAGaaCGGCGGGCGCGaguGGGu -3'
miRNA:   3'- uUGaGCUCgaGCCGCCUGCGCau-UCU- -5'
7749 3' -56 NC_001973.1 + 83950 0.68 0.800719
Target:  5'- cGCUCG-Ga--GGCGGGCGCGUcGAGGc -3'
miRNA:   3'- uUGAGCuCgagCCGCCUGCGCA-UUCU- -5'
7749 3' -56 NC_001973.1 + 121696 0.68 0.826824
Target:  5'- uACgCGAGCUCGGCGGcgGCGuCGUc--- -3'
miRNA:   3'- uUGaGCUCGAGCCGCC--UGC-GCAuucu -5'
7749 3' -56 NC_001973.1 + 62577 0.68 0.835182
Target:  5'- gGGCUCGAGCg-GGCGcagcGACGCGUc--- -3'
miRNA:   3'- -UUGAGCUCGagCCGC----CUGCGCAuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.