Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 5' | -51.8 | NC_001973.1 | + | 2712 | 0.75 | 0.676234 |
Target: 5'- cGUCgGCcGGGGUCGAUcGGGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 2830 | 0.75 | 0.676234 |
Target: 5'- cGUCgGCcGGGGUCGAUcGGGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 10480 | 0.67 | 0.981029 |
Target: 5'- cGCCCguGCUGGGGUUgcacgAGCGGgcgcgcucgcGGUUCAGc -3' miRNA: 3'- -CGGG--CGAUCCCAG-----UUGUC----------UCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12142 | 0.8 | 0.406296 |
Target: 5'- cGUCUGCcGGGGUCAAUcGAGUUCGAGc -3' miRNA: 3'- -CGGGCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12220 | 0.82 | 0.355468 |
Target: 5'- uGCCgGCcAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12298 | 0.79 | 0.471028 |
Target: 5'- uGCCgGCcAGGGUCAAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12377 | 0.77 | 0.550839 |
Target: 5'- cGUCgGCaAGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12455 | 0.77 | 0.58189 |
Target: 5'- cGUCgGCcGGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 16390 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 16468 | 0.82 | 0.331786 |
Target: 5'- uGCCgGCcGGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 16546 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 20992 | 0.86 | 0.198475 |
Target: 5'- cGUCgGCUAGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 21091 | 0.77 | 0.550839 |
Target: 5'- cGUCgGCcGGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 21189 | 0.75 | 0.676234 |
Target: 5'- cGUCgGCcGGGGUCGAUcGGGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 71969 | 0.74 | 0.717559 |
Target: 5'- cGUCgGCgAGGGUCAAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72056 | 0.77 | 0.550839 |
Target: 5'- cGUCgGCgAGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72238 | 0.82 | 0.331786 |
Target: 5'- uGCCgGCcGGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72316 | 1.11 | 0.005691 |
Target: 5'- cGCCCGCUAGGGUCAACAGAGUUCAAGc -3' miRNA: 3'- -CGGGCGAUCCCAGUUGUCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72394 | 1.08 | 0.008975 |
Target: 5'- cGCCCGCUAGGGUCAACAGAGUUCAAa -3' miRNA: 3'- -CGGGCGAUCCCAGUUGUCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 127386 | 0.69 | 0.929886 |
Target: 5'- uGCCgGCaAGGGgCAAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCaGUUGuCUCAAGUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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