Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7749 | 5' | -51.8 | NC_001973.1 | + | 130648 | 0.78 | 0.53042 |
Target: 5'- uGCCgGCaAGGGUCAAUcGAGUUUAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160494 | 0.78 | 0.500335 |
Target: 5'- uGCCgGCcAGGGUCGAUGGAGgUCGAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCaAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 127542 | 0.79 | 0.471028 |
Target: 5'- uGCCgGCaAGGGUCGAUGGAGgUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCaAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 127464 | 0.79 | 0.471028 |
Target: 5'- uGCCgGCaAGGGUCAAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12298 | 0.79 | 0.471028 |
Target: 5'- uGCCgGCcAGGGUCAAUcGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 129177 | 0.8 | 0.424224 |
Target: 5'- cGUCgGCaAGGGUCAAUGGAGUUCAAa -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12142 | 0.8 | 0.406296 |
Target: 5'- cGUCUGCcGGGGUCAAUcGAGUUCGAGc -3' miRNA: 3'- -CGGGCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160729 | 0.81 | 0.380314 |
Target: 5'- cGCCgGCaAGGGUCAAUcGGGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 12220 | 0.82 | 0.355468 |
Target: 5'- uGCCgGCcAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 16468 | 0.82 | 0.331786 |
Target: 5'- uGCCgGCcGGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72238 | 0.82 | 0.331786 |
Target: 5'- uGCCgGCcGGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 129333 | 0.82 | 0.331786 |
Target: 5'- cGCCgGCaAGGGUCGAUAGAGgUCAAGc -3' miRNA: 3'- -CGGgCGaUCCCAGUUGUCUCaAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160572 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 130903 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 16546 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 16390 | 0.86 | 0.214191 |
Target: 5'- cGUCgGCUAGGGUCGAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 20992 | 0.86 | 0.198475 |
Target: 5'- cGUCgGCUAGGGUCAAUcGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGuCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 160651 | 0.98 | 0.037975 |
Target: 5'- cGUCgGCUAGGGUCAACAGAGUUCAAGc -3' miRNA: 3'- -CGGgCGAUCCCAGUUGUCUCAAGUUC- -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72394 | 1.08 | 0.008975 |
Target: 5'- cGCCCGCUAGGGUCAACAGAGUUCAAa -3' miRNA: 3'- -CGGGCGAUCCCAGUUGUCUCAAGUUc -5' |
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7749 | 5' | -51.8 | NC_001973.1 | + | 72316 | 1.11 | 0.005691 |
Target: 5'- cGCCCGCUAGGGUCAACAGAGUUCAAGc -3' miRNA: 3'- -CGGGCGAUCCCAGUUGUCUCAAGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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