miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7752 3' -56.3 NC_001973.1 + 68978 1.06 0.004781
Target:  5'- gCACCGAGAGCGAUUCGGCGAACCCGUc -3'
miRNA:   3'- -GUGGCUCUCGCUAAGCCGCUUGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 83979 0.76 0.383664
Target:  5'- gGCCGAGGGCacggUGGCGAACCUGa -3'
miRNA:   3'- gUGGCUCUCGcuaaGCCGCUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 45603 0.74 0.480401
Target:  5'- uCGCCGgcGGAGCGcgUCGGCGAucagguccacgcGCUCGUc -3'
miRNA:   3'- -GUGGC--UCUCGCuaAGCCGCU------------UGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 132538 0.73 0.567564
Target:  5'- cCGCCGGGcGCGg--CGGCGGGCUCGa -3'
miRNA:   3'- -GUGGCUCuCGCuaaGCCGCUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 115095 0.73 0.58756
Target:  5'- cCGCCGAGGcGCGAUgucugagccgGGCGGAUCCGg -3'
miRNA:   3'- -GUGGCUCU-CGCUAag--------CCGCUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 126095 0.72 0.607683
Target:  5'- -cCCGAGAGCGugccgaCGcGUGAGCCCGg -3'
miRNA:   3'- guGGCUCUCGCuaa---GC-CGCUUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 6409 0.72 0.611718
Target:  5'- gGCCGAGuGCGcggCGGCGGcgcgccgacgagcgcGCCCGUc -3'
miRNA:   3'- gUGGCUCuCGCuaaGCCGCU---------------UGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 83032 0.72 0.627876
Target:  5'- -uUCGGcGGGCGAggCGGCGcGCCCGUc -3'
miRNA:   3'- guGGCU-CUCGCUaaGCCGCuUGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 31091 0.71 0.678278
Target:  5'- cCAgCGAGGGCGcgUUGGUGAugUUGUg -3'
miRNA:   3'- -GUgGCUCUCGCuaAGCCGCUugGGCA- -5'
7752 3' -56.3 NC_001973.1 + 94288 0.71 0.678278
Target:  5'- gCGCCGAGGGaagg-CGGCGcGCCCGc -3'
miRNA:   3'- -GUGGCUCUCgcuaaGCCGCuUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 157299 0.71 0.702206
Target:  5'- cCACCgugcccucgaacgugGAGGGCGAacCGGCGAucuugcacaGCCCGUa -3'
miRNA:   3'- -GUGG---------------CUCUCGCUaaGCCGCU---------UGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 5830 0.7 0.717981
Target:  5'- uCGCCGAucuGGGCGcgucGUUCGGCGAGCgCa- -3'
miRNA:   3'- -GUGGCU---CUCGC----UAAGCCGCUUGgGca -5'
7752 3' -56.3 NC_001973.1 + 89538 0.7 0.737438
Target:  5'- gGCgGuGGGCGAggCGGUGcGCCCGa -3'
miRNA:   3'- gUGgCuCUCGCUaaGCCGCuUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 73282 0.69 0.760308
Target:  5'- gCGCCGGGAGUGGaaacUCGcGCGcguuuucuuauauucGACCCGUa -3'
miRNA:   3'- -GUGGCUCUCGCUa---AGC-CGC---------------UUGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 132423 0.69 0.775208
Target:  5'- gAUCGAGAGCGA---GGCGAGCgUGg -3'
miRNA:   3'- gUGGCUCUCGCUaagCCGCUUGgGCa -5'
7752 3' -56.3 NC_001973.1 + 119302 0.68 0.827958
Target:  5'- gACCGucgcguucaAGAGCGggUCGGC--GCCCGc -3'
miRNA:   3'- gUGGC---------UCUCGCuaAGCCGcuUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 71775 0.68 0.836188
Target:  5'- cCGCCGAGcuCGAggccggCGGCGccCCCGUc -3'
miRNA:   3'- -GUGGCUCucGCUaa----GCCGCuuGGGCA- -5'
7752 3' -56.3 NC_001973.1 + 90316 0.67 0.86723
Target:  5'- -gUCGGcGGGCGAggCGGUGcGCCCGa -3'
miRNA:   3'- guGGCU-CUCGCUaaGCCGCuUGGGCa -5'
7752 3' -56.3 NC_001973.1 + 76459 0.67 0.86723
Target:  5'- uCGCCaaggacauGGGCGGcUCGGCGGuGCCCGa -3'
miRNA:   3'- -GUGGcu------CUCGCUaAGCCGCU-UGGGCa -5'
7752 3' -56.3 NC_001973.1 + 50099 0.67 0.86723
Target:  5'- cCACgGAGGGCGg--CGGCGccGCCgCGUa -3'
miRNA:   3'- -GUGgCUCUCGCuaaGCCGCu-UGG-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.