Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7752 | 3' | -56.3 | NC_001973.1 | + | 132423 | 0.69 | 0.775208 |
Target: 5'- gAUCGAGAGCGA---GGCGAGCgUGg -3' miRNA: 3'- gUGGCUCUCGCUaagCCGCUUGgGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 73282 | 0.69 | 0.760308 |
Target: 5'- gCGCCGGGAGUGGaaacUCGcGCGcguuuucuuauauucGACCCGUa -3' miRNA: 3'- -GUGGCUCUCGCUa---AGC-CGC---------------UUGGGCA- -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 89538 | 0.7 | 0.737438 |
Target: 5'- gGCgGuGGGCGAggCGGUGcGCCCGa -3' miRNA: 3'- gUGgCuCUCGCUaaGCCGCuUGGGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 5830 | 0.7 | 0.717981 |
Target: 5'- uCGCCGAucuGGGCGcgucGUUCGGCGAGCgCa- -3' miRNA: 3'- -GUGGCU---CUCGC----UAAGCCGCUUGgGca -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 157299 | 0.71 | 0.702206 |
Target: 5'- cCACCgugcccucgaacgugGAGGGCGAacCGGCGAucuugcacaGCCCGUa -3' miRNA: 3'- -GUGG---------------CUCUCGCUaaGCCGCU---------UGGGCA- -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 31091 | 0.71 | 0.678278 |
Target: 5'- cCAgCGAGGGCGcgUUGGUGAugUUGUg -3' miRNA: 3'- -GUgGCUCUCGCuaAGCCGCUugGGCA- -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 94288 | 0.71 | 0.678278 |
Target: 5'- gCGCCGAGGGaagg-CGGCGcGCCCGc -3' miRNA: 3'- -GUGGCUCUCgcuaaGCCGCuUGGGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 83032 | 0.72 | 0.627876 |
Target: 5'- -uUCGGcGGGCGAggCGGCGcGCCCGUc -3' miRNA: 3'- guGGCU-CUCGCUaaGCCGCuUGGGCA- -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 6409 | 0.72 | 0.611718 |
Target: 5'- gGCCGAGuGCGcggCGGCGGcgcgccgacgagcgcGCCCGUc -3' miRNA: 3'- gUGGCUCuCGCuaaGCCGCU---------------UGGGCA- -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 126095 | 0.72 | 0.607683 |
Target: 5'- -cCCGAGAGCGugccgaCGcGUGAGCCCGg -3' miRNA: 3'- guGGCUCUCGCuaa---GC-CGCUUGGGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 115095 | 0.73 | 0.58756 |
Target: 5'- cCGCCGAGGcGCGAUgucugagccgGGCGGAUCCGg -3' miRNA: 3'- -GUGGCUCU-CGCUAag--------CCGCUUGGGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 132538 | 0.73 | 0.567564 |
Target: 5'- cCGCCGGGcGCGg--CGGCGGGCUCGa -3' miRNA: 3'- -GUGGCUCuCGCuaaGCCGCUUGGGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 45603 | 0.74 | 0.480401 |
Target: 5'- uCGCCGgcGGAGCGcgUCGGCGAucagguccacgcGCUCGUc -3' miRNA: 3'- -GUGGC--UCUCGCuaAGCCGCU------------UGGGCA- -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 83979 | 0.76 | 0.383664 |
Target: 5'- gGCCGAGGGCacggUGGCGAACCUGa -3' miRNA: 3'- gUGGCUCUCGcuaaGCCGCUUGGGCa -5' |
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7752 | 3' | -56.3 | NC_001973.1 | + | 68978 | 1.06 | 0.004781 |
Target: 5'- gCACCGAGAGCGAUUCGGCGAACCCGUc -3' miRNA: 3'- -GUGGCUCUCGCUAAGCCGCUUGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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