miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7752 5' -63.4 NC_001973.1 + 69013 1.1 0.00066
Target:  5'- cGGACGGGCCGCCCGACUCGCCCCUAGa -3'
miRNA:   3'- -CCUGCCCGGCGGGCUGAGCGGGGAUC- -5'
7752 5' -63.4 NC_001973.1 + 59297 0.73 0.251416
Target:  5'- cGGuCGGGCCgGCCCGcgcGCUCGCCgCa-- -3'
miRNA:   3'- -CCuGCCCGG-CGGGC---UGAGCGGgGauc -5'
7752 5' -63.4 NC_001973.1 + 45221 0.73 0.257128
Target:  5'- -uGCGGGCCGCgugcugCCGGCcCGCCaCCUGGc -3'
miRNA:   3'- ccUGCCCGGCG------GGCUGaGCGG-GGAUC- -5'
7752 5' -63.4 NC_001973.1 + 120392 0.71 0.348454
Target:  5'- gGGGCGauguccGCCGCCCGACgucagGCCCCa-- -3'
miRNA:   3'- -CCUGCc-----CGGCGGGCUGag---CGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 125638 0.71 0.363248
Target:  5'- uGGGCGGGCCGUUCGGgUCGaggCCUGu -3'
miRNA:   3'- -CCUGCCCGGCGGGCUgAGCgg-GGAUc -5'
7752 5' -63.4 NC_001973.1 + 23578 0.7 0.370807
Target:  5'- cGGACGcGCCGCCCGcGCUgCGCgCCa-- -3'
miRNA:   3'- -CCUGCcCGGCGGGC-UGA-GCGgGGauc -5'
7752 5' -63.4 NC_001973.1 + 56657 0.7 0.376161
Target:  5'- aGGCGGGCCGUCCGugUugacguacuucaacCGCCUgUAc -3'
miRNA:   3'- cCUGCCCGGCGGGCugA--------------GCGGGgAUc -5'
7752 5' -63.4 NC_001973.1 + 5744 0.7 0.386243
Target:  5'- cGGACGGGCCGCC-GAagCGgCCCa-- -3'
miRNA:   3'- -CCUGCCCGGCGGgCUgaGCgGGGauc -5'
7752 5' -63.4 NC_001973.1 + 138378 0.7 0.402097
Target:  5'- aGGGCaGGGCCucGCCCGACcCGUCCa--- -3'
miRNA:   3'- -CCUG-CCCGG--CGGGCUGaGCGGGgauc -5'
7752 5' -63.4 NC_001973.1 + 47744 0.7 0.418358
Target:  5'- uGACGcGGCCGCCCGGCggaaucacgGCCuCCUc- -3'
miRNA:   3'- cCUGC-CCGGCGGGCUGag-------CGG-GGAuc -5'
7752 5' -63.4 NC_001973.1 + 70003 0.69 0.460696
Target:  5'- cGAuCGGGCCGCCCucGACcagcgcgCGCUCCUc- -3'
miRNA:   3'- cCU-GCCCGGCGGG--CUGa------GCGGGGAuc -5'
7752 5' -63.4 NC_001973.1 + 40757 0.68 0.49614
Target:  5'- cGGACGcGCUGCCCG-CUCG-CUUUAGg -3'
miRNA:   3'- -CCUGCcCGGCGGGCuGAGCgGGGAUC- -5'
7752 5' -63.4 NC_001973.1 + 86962 0.68 0.505195
Target:  5'- cGACGGcGCCGUCCGcCcCGCCCg--- -3'
miRNA:   3'- cCUGCC-CGGCGGGCuGaGCGGGgauc -5'
7752 5' -63.4 NC_001973.1 + 87549 0.68 0.51432
Target:  5'- cGGuCGaGGCCGCaUCGGCgguucCGCCCCa-- -3'
miRNA:   3'- -CCuGC-CCGGCG-GGCUGa----GCGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 109163 0.67 0.532765
Target:  5'- cGGGCGagccGGUCGCCCGcgcGCUCGCCg---- -3'
miRNA:   3'- -CCUGC----CCGGCGGGC---UGAGCGGggauc -5'
7752 5' -63.4 NC_001973.1 + 158845 0.67 0.532765
Target:  5'- cGGACGaGCCGCCCaaaccgaGCUCgcgaGCCCCg-- -3'
miRNA:   3'- -CCUGCcCGGCGGGc------UGAG----CGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 73625 0.67 0.542077
Target:  5'- cGGACGGcucGCCGUCCGcgcGCUCGUCgCa-- -3'
miRNA:   3'- -CCUGCC---CGGCGGGC---UGAGCGGgGauc -5'
7752 5' -63.4 NC_001973.1 + 132459 0.67 0.542077
Target:  5'- gGGGCGcGGCCucGUCgGGCUCGCCgCg-- -3'
miRNA:   3'- -CCUGC-CCGG--CGGgCUGAGCGGgGauc -5'
7752 5' -63.4 NC_001973.1 + 46502 0.67 0.564633
Target:  5'- cGGACGGccucGgCGCCCGACUacgaguacuacgcgaCGCCUCg-- -3'
miRNA:   3'- -CCUGCC----CgGCGGGCUGA---------------GCGGGGauc -5'
7752 5' -63.4 NC_001973.1 + 76465 0.66 0.608471
Target:  5'- aGGACauGGGCgGCUCGGCggUGCCCg--- -3'
miRNA:   3'- -CCUG--CCCGgCGGGCUGa-GCGGGgauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.