miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7757 3' -60.4 NC_001973.1 + 95721 0.66 0.756845
Target:  5'- cGGUGCGCcgGCUGuUGGcGcAGGGCGCg- -3'
miRNA:   3'- aCCACGUG--CGGC-ACCuC-UUCCGCGgc -5'
7757 3' -60.4 NC_001973.1 + 50211 0.66 0.741898
Target:  5'- ---cGCGuCGCCG-GGAuugcguugcggcaucGAAGGCGCCa -3'
miRNA:   3'- accaCGU-GCGGCaCCU---------------CUUCCGCGGc -5'
7757 3' -60.4 NC_001973.1 + 95130 0.66 0.738124
Target:  5'- cGGUGCACGacCCGUGGGc--GGCcgugcagaaGCCGc -3'
miRNA:   3'- aCCACGUGC--GGCACCUcuuCCG---------CGGC- -5'
7757 3' -60.4 NC_001973.1 + 28930 0.66 0.72863
Target:  5'- uUGGgcuUGCACGCgGcUGGGGcggcagcGGGgGCCGg -3'
miRNA:   3'- -ACC---ACGUGCGgC-ACCUCu------UCCgCGGC- -5'
7757 3' -60.4 NC_001973.1 + 121307 0.66 0.709415
Target:  5'- cGGcGCGCGCCGgcGGAc---GCGCCGa -3'
miRNA:   3'- aCCaCGUGCGGCa-CCUcuucCGCGGC- -5'
7757 3' -60.4 NC_001973.1 + 4207 0.67 0.699711
Target:  5'- aGGUGCAUGCgcUGGA--AGGCGCg- -3'
miRNA:   3'- aCCACGUGCGgcACCUcuUCCGCGgc -5'
7757 3' -60.4 NC_001973.1 + 74877 0.67 0.699711
Target:  5'- cGGUGU-CGUCGUGGAGcgagcucgcGAGcGCGCUc -3'
miRNA:   3'- aCCACGuGCGGCACCUC---------UUC-CGCGGc -5'
7757 3' -60.4 NC_001973.1 + 144747 0.67 0.699711
Target:  5'- cGGagGCG-GCCGaGGAGgcGGCGCgCGa -3'
miRNA:   3'- aCCa-CGUgCGGCaCCUCuuCCGCG-GC- -5'
7757 3' -60.4 NC_001973.1 + 50087 0.67 0.689953
Target:  5'- gGGgcgGCgGCGCCacGGAGGGcggcGGCGCCGc -3'
miRNA:   3'- aCCa--CG-UGCGGcaCCUCUU----CCGCGGC- -5'
7757 3' -60.4 NC_001973.1 + 60093 0.67 0.680151
Target:  5'- aGGUGCGCGaCGUGGu---GGCGUg- -3'
miRNA:   3'- aCCACGUGCgGCACCucuuCCGCGgc -5'
7757 3' -60.4 NC_001973.1 + 18539 0.68 0.638669
Target:  5'- cGGgGCGCGCCGgccgcauAGGCGCCu -3'
miRNA:   3'- aCCaCGUGCGGCaccucu-UCCGCGGc -5'
7757 3' -60.4 NC_001973.1 + 82467 0.68 0.634705
Target:  5'- --aUGCGCGCCGUguccgccggcccgauGGAGAcGcGCGCCu -3'
miRNA:   3'- accACGUGCGGCA---------------CCUCUuC-CGCGGc -5'
7757 3' -60.4 NC_001973.1 + 74784 0.68 0.630741
Target:  5'- uUGGUGCGguCGCCG-GGGu-GGGCGCg- -3'
miRNA:   3'- -ACCACGU--GCGGCaCCUcuUCCGCGgc -5'
7757 3' -60.4 NC_001973.1 + 132430 0.68 0.620832
Target:  5'- ---aGCgagGCGagCGUGGuGGAGGCGCCGg -3'
miRNA:   3'- accaCG---UGCg-GCACCuCUUCCGCGGC- -5'
7757 3' -60.4 NC_001973.1 + 85726 0.68 0.610931
Target:  5'- cGGccGCACGgCGuUGGAGuuGGuCGCCGc -3'
miRNA:   3'- aCCa-CGUGCgGC-ACCUCuuCC-GCGGC- -5'
7757 3' -60.4 NC_001973.1 + 51837 0.68 0.610931
Target:  5'- gUGGUGCgu-CUGUGcGAGcuGGGCGCCGu -3'
miRNA:   3'- -ACCACGugcGGCAC-CUCu-UCCGCGGC- -5'
7757 3' -60.4 NC_001973.1 + 81797 0.68 0.601045
Target:  5'- -aGUGCACgGCCGcGGuGuccGGCGCCGc -3'
miRNA:   3'- acCACGUG-CGGCaCCuCuu-CCGCGGC- -5'
7757 3' -60.4 NC_001973.1 + 42591 0.69 0.561781
Target:  5'- cGGUGCuCGCCaaGGAGGugcggcgcgaGGGCGCgGu -3'
miRNA:   3'- aCCACGuGCGGcaCCUCU----------UCCGCGgC- -5'
7757 3' -60.4 NC_001973.1 + 28976 0.69 0.561781
Target:  5'- cGGcGaCGCGuuGUagucGGGGAAgGGCGCCGg -3'
miRNA:   3'- aCCaC-GUGCggCA----CCUCUU-CCGCGGC- -5'
7757 3' -60.4 NC_001973.1 + 135666 0.69 0.552065
Target:  5'- aGGUGUugGCCGUGGcGcuGGC-CUGc -3'
miRNA:   3'- aCCACGugCGGCACCuCuuCCGcGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.