miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7757 5' -55.2 NC_001973.1 + 106683 0.66 0.939387
Target:  5'- -aCGAUCUCgacguCGCUUUGGcGGgcGCGCc -3'
miRNA:   3'- gaGCUAGAG-----GCGGAACC-UCuuCGCGu -5'
7757 5' -55.2 NC_001973.1 + 82767 0.66 0.939387
Target:  5'- gUCGAUCUgcaggUCGCCgaguUGGuccucGAGGCGCu -3'
miRNA:   3'- gAGCUAGA-----GGCGGa---ACCu----CUUCGCGu -5'
7757 5' -55.2 NC_001973.1 + 100970 0.66 0.934516
Target:  5'- gCUCGGcCUCguCGCCUUGuAGuGGCGCGu -3'
miRNA:   3'- -GAGCUaGAG--GCGGAACcUCuUCGCGU- -5'
7757 5' -55.2 NC_001973.1 + 91782 0.66 0.924051
Target:  5'- cCUCGAUa-UUGuCCUUGGcgAGGAGCGCGu -3'
miRNA:   3'- -GAGCUAgaGGC-GGAACC--UCUUCGCGU- -5'
7757 5' -55.2 NC_001973.1 + 35060 0.67 0.906546
Target:  5'- uUCGAUUUCCGCCgcGGcgccgacguGAAGCGg- -3'
miRNA:   3'- gAGCUAGAGGCGGaaCCu--------CUUCGCgu -5'
7757 5' -55.2 NC_001973.1 + 15572 0.67 0.906546
Target:  5'- uUCGAUaaaCUCCGUCaaGGGGucGGCGCu -3'
miRNA:   3'- gAGCUA---GAGGCGGaaCCUCu-UCGCGu -5'
7757 5' -55.2 NC_001973.1 + 86686 0.67 0.88691
Target:  5'- gUCGAguaccacgccuUCUCCGCgUgucccaaaucccUGGAGAGGCuGCGc -3'
miRNA:   3'- gAGCU-----------AGAGGCGgA------------ACCUCUUCG-CGU- -5'
7757 5' -55.2 NC_001973.1 + 137662 0.67 0.88691
Target:  5'- -cCGGUCUgaaCCGCUUgacgcGGGGAaAGCGCAu -3'
miRNA:   3'- gaGCUAGA---GGCGGAa----CCUCU-UCGCGU- -5'
7757 5' -55.2 NC_001973.1 + 50420 0.67 0.879905
Target:  5'- cCUCGAUgUUguCCUUGGcgAGGAGCGCGu -3'
miRNA:   3'- -GAGCUAgAGgcGGAACC--UCUUCGCGU- -5'
7757 5' -55.2 NC_001973.1 + 115803 0.68 0.857575
Target:  5'- cCUCGGcgagcaCUuuGCCguggUGGAGAacaAGCGCGu -3'
miRNA:   3'- -GAGCUa-----GAggCGGa---ACCUCU---UCGCGU- -5'
7757 5' -55.2 NC_001973.1 + 81938 0.69 0.833394
Target:  5'- aUCGGcgUCCGgCgcGGAGAAGCGCu -3'
miRNA:   3'- gAGCUagAGGCgGaaCCUCUUCGCGu -5'
7757 5' -55.2 NC_001973.1 + 55952 0.71 0.722323
Target:  5'- aCUCGGgcccgUUCUGUCg-GGAGAGGCGCGc -3'
miRNA:   3'- -GAGCUa----GAGGCGGaaCCUCUUCGCGU- -5'
7757 5' -55.2 NC_001973.1 + 75256 0.75 0.487216
Target:  5'- uCUCGAcacCCGCCUgcucgacgggcucuUGGAGAAGCGCu -3'
miRNA:   3'- -GAGCUagaGGCGGA--------------ACCUCUUCGCGu -5'
7757 5' -55.2 NC_001973.1 + 63142 1.08 0.003811
Target:  5'- cCUCGAUCUCCGCCUUGGAGAAGCGCAc -3'
miRNA:   3'- -GAGCUAGAGGCGGAACCUCUUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.