miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7759 5' -56.2 NC_001973.1 + 140750 0.66 0.922934
Target:  5'- uGGCGcuguACCGCGAguucucGCGCGUGuacagcgaGCGCGagUUCg -3'
miRNA:   3'- -CCGU----UGGCGCU------CGUGCAC--------UGCGU--GAG- -5'
7759 5' -56.2 NC_001973.1 + 123879 0.66 0.922934
Target:  5'- gGGaCGACgGCacGCugGUGcACGUGCUCg -3'
miRNA:   3'- -CC-GUUGgCGcuCGugCAC-UGCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 83971 0.66 0.922934
Target:  5'- aGGCAgcagGCCGaGGGCACG-GugGCGa-- -3'
miRNA:   3'- -CCGU----UGGCgCUCGUGCaCugCGUgag -5'
7759 5' -56.2 NC_001973.1 + 56648 0.66 0.922387
Target:  5'- cGCGGCCaaagGCGGGC-CGUccguguuGACGUACUUc -3'
miRNA:   3'- cCGUUGG----CGCUCGuGCA-------CUGCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 23237 0.66 0.919617
Target:  5'- uGGC-GCUGCuGAGCgccGCGUGucgcugccccgccgcGCGCGCUUg -3'
miRNA:   3'- -CCGuUGGCG-CUCG---UGCAC---------------UGCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 42046 0.66 0.917359
Target:  5'- aGGUGAgCGCGGGCAguuuCGUGG-GUugUCu -3'
miRNA:   3'- -CCGUUgGCGCUCGU----GCACUgCGugAG- -5'
7759 5' -56.2 NC_001973.1 + 52157 0.66 0.917359
Target:  5'- gGGCAGCCgGUGGGCGC----CGUACUUg -3'
miRNA:   3'- -CCGUUGG-CGCUCGUGcacuGCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 83087 0.66 0.917359
Target:  5'- aGCGGCgGCG-GCGCcgu-CGCGCUCa -3'
miRNA:   3'- cCGUUGgCGCuCGUGcacuGCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 115656 0.66 0.917359
Target:  5'- uGGaCAGCCGCG-GCugGgccGACGagcaGCUg -3'
miRNA:   3'- -CC-GUUGGCGCuCGugCa--CUGCg---UGAg -5'
7759 5' -56.2 NC_001973.1 + 67700 0.66 0.917359
Target:  5'- cGGUGuacGCCaGCGGGCGCucggcGACGCACa- -3'
miRNA:   3'- -CCGU---UGG-CGCUCGUGca---CUGCGUGag -5'
7759 5' -56.2 NC_001973.1 + 73695 0.66 0.917359
Target:  5'- gGGCcccGCCGCGcAGUcgACG-GGCGCGCcgUCg -3'
miRNA:   3'- -CCGu--UGGCGC-UCG--UGCaCUGCGUG--AG- -5'
7759 5' -56.2 NC_001973.1 + 120958 0.66 0.916789
Target:  5'- cGGCGGCCaGCGcggcgguuuGCGCGUcGAUcuuggccgucaaaGCGCUCa -3'
miRNA:   3'- -CCGUUGG-CGCu--------CGUGCA-CUG-------------CGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 124460 0.66 0.913902
Target:  5'- aGGCcGCCGCGugcaaauucaucgcGCGCGUcaacgccCGCGCUCu -3'
miRNA:   3'- -CCGuUGGCGCu-------------CGUGCAcu-----GCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 61116 0.66 0.91155
Target:  5'- aGCGGCgGCGGG-GCGcGGCGuCGCUCc -3'
miRNA:   3'- cCGUUGgCGCUCgUGCaCUGC-GUGAG- -5'
7759 5' -56.2 NC_001973.1 + 7619 0.66 0.91155
Target:  5'- cGCAcGCC-CGAGCAgcUGcGCGCGCUCg -3'
miRNA:   3'- cCGU-UGGcGCUCGUgcAC-UGCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 23061 0.66 0.91155
Target:  5'- gGGCAACgGCaAGCuGCGaaggaUGGCGCugcGCUCg -3'
miRNA:   3'- -CCGUUGgCGcUCG-UGC-----ACUGCG---UGAG- -5'
7759 5' -56.2 NC_001973.1 + 23674 0.66 0.91155
Target:  5'- cGGUGcUCGCGGGCcuccgcGCGUcGACGCGC-Ca -3'
miRNA:   3'- -CCGUuGGCGCUCG------UGCA-CUGCGUGaG- -5'
7759 5' -56.2 NC_001973.1 + 28294 0.66 0.91155
Target:  5'- uGGCGGCCGaGcGcCGCGUcGGCGCAaacCUCg -3'
miRNA:   3'- -CCGUUGGCgCuC-GUGCA-CUGCGU---GAG- -5'
7759 5' -56.2 NC_001973.1 + 74439 0.66 0.91155
Target:  5'- aGGaAACCGuCGGGC-CGguuuuCGCACUCg -3'
miRNA:   3'- -CCgUUGGC-GCUCGuGCacu--GCGUGAG- -5'
7759 5' -56.2 NC_001973.1 + 1815 0.66 0.910957
Target:  5'- uGGUccCCGcCGAGCGCGcacacggccaggcUGugGCACa- -3'
miRNA:   3'- -CCGuuGGC-GCUCGUGC-------------ACugCGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.