miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7763 3' -56.5 NC_001973.1 + 58986 1.1 0.00236
Target:  5'- cGCCGAGCACAAGAUCGCGCAGGCGAGc -3'
miRNA:   3'- -CGGCUCGUGUUCUAGCGCGUCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 44480 0.8 0.239298
Target:  5'- cGCuCGGGCGCGGGcAUCgGCGCGGGCGGu -3'
miRNA:   3'- -CG-GCUCGUGUUC-UAG-CGCGUCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 124189 0.76 0.354323
Target:  5'- cUCGAGCGCGAGGUCGCGgCGGcGCGc- -3'
miRNA:   3'- cGGCUCGUGUUCUAGCGC-GUC-CGCuc -5'
7763 3' -56.5 NC_001973.1 + 146073 0.76 0.378273
Target:  5'- cGCCGAGC-C-GGcUCGgGCGGGCGGGg -3'
miRNA:   3'- -CGGCUCGuGuUCuAGCgCGUCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 150673 0.76 0.394833
Target:  5'- aUCGAGCAC----UCGCGCAGGCGGa -3'
miRNA:   3'- cGGCUCGUGuucuAGCGCGUCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 101193 0.75 0.436432
Target:  5'- cGCCGGGCGaaauuggCGCGCGGGCGGc -3'
miRNA:   3'- -CGGCUCGUguucua-GCGCGUCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 90291 0.74 0.456323
Target:  5'- gGCCGGuguucaaggcGCACAGucGGUCG-GCGGGCGAGg -3'
miRNA:   3'- -CGGCU----------CGUGUU--CUAGCgCGUCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 136437 0.74 0.474821
Target:  5'- uGCgCGAGCGCAGGggCGCGUAGGg--- -3'
miRNA:   3'- -CG-GCUCGUGUUCuaGCGCGUCCgcuc -5'
7763 3' -56.5 NC_001973.1 + 152311 0.74 0.48421
Target:  5'- aUCGAGCGCGcucguuaucguGGAcgcggUGCGCGGGCGGGg -3'
miRNA:   3'- cGGCUCGUGU-----------UCUa----GCGCGUCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 123056 0.73 0.522603
Target:  5'- aCCG-GCACGGGA-CGCGCucucgcccGGGCGAGc -3'
miRNA:   3'- cGGCuCGUGUUCUaGCGCG--------UCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 26548 0.73 0.531407
Target:  5'- gGCCGAGCGCAAccauuccGAgu-CGCGGGCGAu -3'
miRNA:   3'- -CGGCUCGUGUU-------CUagcGCGUCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 133453 0.73 0.541251
Target:  5'- aGUCG-GCGCGcGGGUCGCGCacggagcgccagcGGGCGAGc -3'
miRNA:   3'- -CGGCuCGUGU-UCUAGCGCG-------------UCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 77986 0.73 0.55215
Target:  5'- cCCGAGUACAAGAUaccgaaGCAGGUGAu -3'
miRNA:   3'- cGGCUCGUGUUCUAgcg---CGUCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 142413 0.72 0.58218
Target:  5'- aGCCG-GCAgAcGAUCGUGCccGGCGAGc -3'
miRNA:   3'- -CGGCuCGUgUuCUAGCGCGu-CCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 30493 0.72 0.58218
Target:  5'- aGUCGGGCACGAcGGU-GCGCAgGGCGGu -3'
miRNA:   3'- -CGGCUCGUGUU-CUAgCGCGU-CCGCUc -5'
7763 3' -56.5 NC_001973.1 + 101152 0.71 0.632844
Target:  5'- aGCUGAGCACGAGcgCGCagucgugcaGCAGGUc-- -3'
miRNA:   3'- -CGGCUCGUGUUCuaGCG---------CGUCCGcuc -5'
7763 3' -56.5 NC_001973.1 + 94046 0.7 0.693519
Target:  5'- uGCUGAGCGCGGacGAUUGCGUGGcGCGc- -3'
miRNA:   3'- -CGGCUCGUGUU--CUAGCGCGUC-CGCuc -5'
7763 3' -56.5 NC_001973.1 + 105827 0.7 0.693519
Target:  5'- -aUGAGCACGuagagauGAUCGCaGCcGGCGAGc -3'
miRNA:   3'- cgGCUCGUGUu------CUAGCG-CGuCCGCUC- -5'
7763 3' -56.5 NC_001973.1 + 119217 0.7 0.693519
Target:  5'- cGCCcuGCGuCGAGGUCGacgccgaGCAGGCGAa -3'
miRNA:   3'- -CGGcuCGU-GUUCUAGCg------CGUCCGCUc -5'
7763 3' -56.5 NC_001973.1 + 88746 0.7 0.703505
Target:  5'- -aCGGGCGCcucguAGGcGUCGCGCAGGCa-- -3'
miRNA:   3'- cgGCUCGUG-----UUC-UAGCGCGUCCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.