miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7763 5' -55.2 NC_001973.1 + 104262 0.67 0.872373
Target:  5'- -----gUUCGGCGGCGGCGcCGCcgccgGGCu -3'
miRNA:   3'- aagaaaAGGCCGCUGCCGU-GCGa----CUG- -5'
7763 5' -55.2 NC_001973.1 + 133294 0.68 0.857118
Target:  5'- -aCgcggCCGGCGGCGGCgccgucGCGC-GGCg -3'
miRNA:   3'- aaGaaaaGGCCGCUGCCG------UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 959 0.68 0.857118
Target:  5'- ----cUUCCGGCG-CGG-ACGCUcGACg -3'
miRNA:   3'- aagaaAAGGCCGCuGCCgUGCGA-CUG- -5'
7763 5' -55.2 NC_001973.1 + 58642 0.68 0.849174
Target:  5'- cUUCgacgCCGGCGGCGuGUucaACGCgGACg -3'
miRNA:   3'- -AAGaaaaGGCCGCUGC-CG---UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 95793 0.68 0.841027
Target:  5'- -gCUggaCCGGCguGACGGCuACGCgGACg -3'
miRNA:   3'- aaGAaaaGGCCG--CUGCCG-UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 158822 0.68 0.824157
Target:  5'- aUUgaagCCGGCGGcCGaGCGCGCgGACg -3'
miRNA:   3'- aAGaaaaGGCCGCU-GC-CGUGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 117504 0.69 0.806569
Target:  5'- -gCUUUggCCGcCGGCGGCGCGUaGACu -3'
miRNA:   3'- aaGAAAa-GGCcGCUGCCGUGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 56171 0.69 0.806569
Target:  5'- gUCgucgCUGuCGGCGGCGCGCUcGACg -3'
miRNA:   3'- aAGaaaaGGCcGCUGCCGUGCGA-CUG- -5'
7763 5' -55.2 NC_001973.1 + 58038 0.69 0.788331
Target:  5'- cUCgggcUCCGGCGGCGGCG-GC-GGCu -3'
miRNA:   3'- aAGaaa-AGGCCGCUGCCGUgCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 88550 0.69 0.773322
Target:  5'- gUCcacgCCGGCGuCGGCGCGCgcccuccgcacgcacUGGCg -3'
miRNA:   3'- aAGaaaaGGCCGCuGCCGUGCG---------------ACUG- -5'
7763 5' -55.2 NC_001973.1 + 55424 0.7 0.750198
Target:  5'- uUUCg---UCGGCGGCGGCGgGCccGACg -3'
miRNA:   3'- -AAGaaaaGGCCGCUGCCGUgCGa-CUG- -5'
7763 5' -55.2 NC_001973.1 + 98338 0.7 0.730453
Target:  5'- -gCUgcagCGGCGGCGGCGCGCguucGGCc -3'
miRNA:   3'- aaGAaaagGCCGCUGCCGUGCGa---CUG- -5'
7763 5' -55.2 NC_001973.1 + 100934 0.7 0.720444
Target:  5'- ------aCUGGUGAUGGCGCGCUcGGCc -3'
miRNA:   3'- aagaaaaGGCCGCUGCCGUGCGA-CUG- -5'
7763 5' -55.2 NC_001973.1 + 28394 0.71 0.710358
Target:  5'- cUUCgcg-CCGGCGACGccgucagugaGCGCGCUuGGCg -3'
miRNA:   3'- -AAGaaaaGGCCGCUGC----------CGUGCGA-CUG- -5'
7763 5' -55.2 NC_001973.1 + 35136 0.71 0.707318
Target:  5'- -cCUccgCCGGCGACaGGCcccgcuugauggcgACGCUGGCg -3'
miRNA:   3'- aaGAaaaGGCCGCUG-CCG--------------UGCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 22963 0.71 0.679727
Target:  5'- cUCgaguaCGcGCGGCGGCGCGCcGACg -3'
miRNA:   3'- aAGaaaagGC-CGCUGCCGUGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 45959 0.72 0.638364
Target:  5'- cUCUUga-CGGCGGcCGGCGCGCUcGCc -3'
miRNA:   3'- aAGAAaagGCCGCU-GCCGUGCGAcUG- -5'
7763 5' -55.2 NC_001973.1 + 81938 0.74 0.515718
Target:  5'- aUCggcgUCCGGCG-CGGagaaGCGCUGGCc -3'
miRNA:   3'- aAGaaa-AGGCCGCuGCCg---UGCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 55878 0.74 0.505854
Target:  5'- cUUUUUgggaCCGGCGGCGGCAgGCUcgGGCu -3'
miRNA:   3'- aAGAAAa---GGCCGCUGCCGUgCGA--CUG- -5'
7763 5' -55.2 NC_001973.1 + 77011 0.74 0.496071
Target:  5'- cUCg--UCgggCGGCGGCGGCGCGCgcaagGACg -3'
miRNA:   3'- aAGaaaAG---GCCGCUGCCGUGCGa----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.