miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7765 3' -57.3 NC_001973.1 + 132538 0.66 0.853792
Target:  5'- -cCGCCgGGCGC----GGCGGCgGGCUCg -3'
miRNA:   3'- aaGCGG-CCGCGaaacCCGUUG-CUGAG- -5'
7765 3' -57.3 NC_001973.1 + 81811 0.66 0.853792
Target:  5'- -gUGuCCGGCGCcgccGGCGGCGACg- -3'
miRNA:   3'- aaGC-GGCCGCGaaacCCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 103933 0.66 0.853006
Target:  5'- gUCGUcgCGGCGCg--GGGCGugccgucGCGGCg- -3'
miRNA:   3'- aAGCG--GCCGCGaaaCCCGU-------UGCUGag -5'
7765 3' -57.3 NC_001973.1 + 29614 0.66 0.853006
Target:  5'- aUUCGCagacuCGGUGCUcaagcugUUGGGCGaucugaucgACGACUa -3'
miRNA:   3'- -AAGCG-----GCCGCGA-------AACCCGU---------UGCUGAg -5'
7765 3' -57.3 NC_001973.1 + 56345 0.66 0.845848
Target:  5'- cUCGCgGccGCGCUc-GGGCccCGACUCg -3'
miRNA:   3'- aAGCGgC--CGCGAaaCCCGuuGCUGAG- -5'
7765 3' -57.3 NC_001973.1 + 102179 0.66 0.845848
Target:  5'- cUCGUgGG-GCuUUUGGGCGcgaacGCGACUUc -3'
miRNA:   3'- aAGCGgCCgCG-AAACCCGU-----UGCUGAG- -5'
7765 3' -57.3 NC_001973.1 + 136587 0.66 0.831901
Target:  5'- -gCGCCGGCGCgacgcucagcucgucGGGCGccuCGGCgUCg -3'
miRNA:   3'- aaGCGGCCGCGaaa------------CCCGUu--GCUG-AG- -5'
7765 3' -57.3 NC_001973.1 + 122617 0.66 0.829383
Target:  5'- gUCGgCGGCGCcgacgcGGGCGcCGGCgUCg -3'
miRNA:   3'- aAGCgGCCGCGaaa---CCCGUuGCUG-AG- -5'
7765 3' -57.3 NC_001973.1 + 118096 0.66 0.829383
Target:  5'- -aCGUgGGCGUgacggUGGGCGcgGCG-CUCa -3'
miRNA:   3'- aaGCGgCCGCGaa---ACCCGU--UGCuGAG- -5'
7765 3' -57.3 NC_001973.1 + 35685 0.66 0.820877
Target:  5'- -aCGgCGGCGCg--GuGGCGGCGAUg- -3'
miRNA:   3'- aaGCgGCCGCGaaaC-CCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 23040 0.67 0.812197
Target:  5'- gUUCGUguaCGaGgGCUUcgUGGGCAACGGCa- -3'
miRNA:   3'- -AAGCG---GC-CgCGAA--ACCCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 44454 0.67 0.812197
Target:  5'- -gCGCgGGCGCUcgGGGaucgAACGggcGCUCg -3'
miRNA:   3'- aaGCGgCCGCGAaaCCCg---UUGC---UGAG- -5'
7765 3' -57.3 NC_001973.1 + 158036 0.67 0.803354
Target:  5'- -cCGCCGccGCGCccgUGcguaGCGACGACUCg -3'
miRNA:   3'- aaGCGGC--CGCGaa-ACc---CGUUGCUGAG- -5'
7765 3' -57.3 NC_001973.1 + 103715 0.67 0.794354
Target:  5'- -aUGCCGGCcCg--GGcGCGGCGACUg -3'
miRNA:   3'- aaGCGGCCGcGaaaCC-CGUUGCUGAg -5'
7765 3' -57.3 NC_001973.1 + 102815 0.67 0.794354
Target:  5'- --gGCCGGCGUcaUGGcgcgccGCAACGACa- -3'
miRNA:   3'- aagCGGCCGCGaaACC------CGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 17052 0.67 0.785207
Target:  5'- --gGUCGGCGC-UUGGGCggUGAg-- -3'
miRNA:   3'- aagCGGCCGCGaAACCCGuuGCUgag -5'
7765 3' -57.3 NC_001973.1 + 136698 0.67 0.785207
Target:  5'- gUUCGuuGgGCGCcuUUUGGGCGAgGAUg- -3'
miRNA:   3'- -AAGCggC-CGCG--AAACCCGUUgCUGag -5'
7765 3' -57.3 NC_001973.1 + 74402 0.67 0.775922
Target:  5'- cUCGUCGGCGUUgagaUGGGagggaaAACGAUUg -3'
miRNA:   3'- aAGCGGCCGCGAa---ACCCg-----UUGCUGAg -5'
7765 3' -57.3 NC_001973.1 + 57930 0.67 0.775922
Target:  5'- gUCGCCGuacaCGacgUGGGCGACGGCcCg -3'
miRNA:   3'- aAGCGGCc---GCgaaACCCGUUGCUGaG- -5'
7765 3' -57.3 NC_001973.1 + 38353 0.67 0.775922
Target:  5'- -cCGCCGGCGgc---GGCGACGGCa- -3'
miRNA:   3'- aaGCGGCCGCgaaacCCGUUGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.