miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7765 3' -57.3 NC_001973.1 + 99360 0.67 0.77311
Target:  5'- cUUCGcCCGGCGCcaccaacgaauaauUgcuUUGGGCGACGAa-- -3'
miRNA:   3'- -AAGC-GGCCGCG--------------A---AACCCGUUGCUgag -5'
7765 3' -57.3 NC_001973.1 + 28962 0.67 0.766507
Target:  5'- --gGCCGGCaGUc--GGGCGGCGACg- -3'
miRNA:   3'- aagCGGCCG-CGaaaCCCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 96758 0.68 0.747326
Target:  5'- -gCGCCGGCGagucGGGCGGCGugGCg- -3'
miRNA:   3'- aaGCGGCCGCgaaaCCCGUUGC--UGag -5'
7765 3' -57.3 NC_001973.1 + 8837 0.68 0.747326
Target:  5'- -cCGCCGucccGCGCUgcUGGcGCGGCGACa- -3'
miRNA:   3'- aaGCGGC----CGCGAa-ACC-CGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 11366 0.68 0.747326
Target:  5'- gUUUGUCGGUGCguucGGUAACGGCUa -3'
miRNA:   3'- -AAGCGGCCGCGaaacCCGUUGCUGAg -5'
7765 3' -57.3 NC_001973.1 + 23267 0.68 0.747326
Target:  5'- -cCGCCGcgcGCGCUUgcccGGCGGCGGCg- -3'
miRNA:   3'- aaGCGGC---CGCGAAac--CCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 55424 0.68 0.747326
Target:  5'- uUUCGUCGGCgGCggcGGGCccGACGGCg- -3'
miRNA:   3'- -AAGCGGCCG-CGaaaCCCG--UUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 27875 0.68 0.737579
Target:  5'- -nCGCgGGCGC---GGGCGcgcucucgccGCGACUCc -3'
miRNA:   3'- aaGCGgCCGCGaaaCCCGU----------UGCUGAG- -5'
7765 3' -57.3 NC_001973.1 + 20473 0.68 0.727739
Target:  5'- cUCGCCcucGGCGCacagcgUGGGCAACaGgUCg -3'
miRNA:   3'- aAGCGG---CCGCGaa----ACCCGUUGcUgAG- -5'
7765 3' -57.3 NC_001973.1 + 45832 0.68 0.70782
Target:  5'- -gCGCCGGCGCggcguucgUGGGCcugGGCGucgcgggcgcgcGCUCc -3'
miRNA:   3'- aaGCGGCCGCGaa------ACCCG---UUGC------------UGAG- -5'
7765 3' -57.3 NC_001973.1 + 35168 0.69 0.697759
Target:  5'- -aCGCUGGCGCgac--GCAGCGACcUCg -3'
miRNA:   3'- aaGCGGCCGCGaaaccCGUUGCUG-AG- -5'
7765 3' -57.3 NC_001973.1 + 96589 0.69 0.687643
Target:  5'- -gCGgCGGCGCU---GGCGACGACg- -3'
miRNA:   3'- aaGCgGCCGCGAaacCCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 24164 0.69 0.687643
Target:  5'- -gCGCUGGCGCUgccgcUGcGGCcGCGGCg- -3'
miRNA:   3'- aaGCGGCCGCGAa----AC-CCGuUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 50090 0.69 0.687643
Target:  5'- -gCGgCGGCGCcacggaGGGCGGCGGCg- -3'
miRNA:   3'- aaGCgGCCGCGaaa---CCCGUUGCUGag -5'
7765 3' -57.3 NC_001973.1 + 27851 0.69 0.66728
Target:  5'- gUUgGCCGGCGCUggcGGCcGCGGC-Cg -3'
miRNA:   3'- -AAgCGGCCGCGAaacCCGuUGCUGaG- -5'
7765 3' -57.3 NC_001973.1 + 109563 0.7 0.626279
Target:  5'- -aCGCCGGCGCg--GGGCGgguuucgggcGCGAg-- -3'
miRNA:   3'- aaGCGGCCGCGaaaCCCGU----------UGCUgag -5'
7765 3' -57.3 NC_001973.1 + 88491 0.7 0.626279
Target:  5'- -cCGCCGGCGC----GGCG-CGGCUCc -3'
miRNA:   3'- aaGCGGCCGCGaaacCCGUuGCUGAG- -5'
7765 3' -57.3 NC_001973.1 + 94705 0.7 0.616019
Target:  5'- aUCGCCaGGUGUgggUGGGCGagGCGGC-Cg -3'
miRNA:   3'- aAGCGG-CCGCGaa-ACCCGU--UGCUGaG- -5'
7765 3' -57.3 NC_001973.1 + 152386 0.7 0.605772
Target:  5'- --gGCCGGCGCgggcGGGCGcgggGCGGCg- -3'
miRNA:   3'- aagCGGCCGCGaaa-CCCGU----UGCUGag -5'
7765 3' -57.3 NC_001973.1 + 53674 0.7 0.595545
Target:  5'- cUUUGCUGGCGCgucuGGCGuuGCGAUUCg -3'
miRNA:   3'- -AAGCGGCCGCGaaacCCGU--UGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.