miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7765 5' -57.9 NC_001973.1 + 158527 0.66 0.876228
Target:  5'- uUUGcGcCGcCG-CCAcCGCCUCCUCCg -3'
miRNA:   3'- -AGCuCaGCaGCuGGUcGCGGAGGAGG- -5'
7765 5' -57.9 NC_001973.1 + 137207 0.66 0.869145
Target:  5'- gCGAGUCGcgCGG-CGGCGCgUCCg-- -3'
miRNA:   3'- aGCUCAGCa-GCUgGUCGCGgAGGagg -5'
7765 5' -57.9 NC_001973.1 + 151895 0.66 0.861862
Target:  5'- aCGGcUCGUUcucgGGCCGcGCGuCCUUCUCCa -3'
miRNA:   3'- aGCUcAGCAG----CUGGU-CGC-GGAGGAGG- -5'
7765 5' -57.9 NC_001973.1 + 137018 0.66 0.861862
Target:  5'- cCGGGUCGcCGA--AGCGCCUUUUgCa -3'
miRNA:   3'- aGCUCAGCaGCUggUCGCGGAGGAgG- -5'
7765 5' -57.9 NC_001973.1 + 25555 0.66 0.861862
Target:  5'- uUCGAGaUCGcCGcuucaGCCGcCGCCcCCUCCu -3'
miRNA:   3'- -AGCUC-AGCaGC-----UGGUcGCGGaGGAGG- -5'
7765 5' -57.9 NC_001973.1 + 146940 0.66 0.861123
Target:  5'- -gGAGUUGUCGGCCGaggugaagauguuGCGCaugCCcgCCg -3'
miRNA:   3'- agCUCAGCAGCUGGU-------------CGCGga-GGa-GG- -5'
7765 5' -57.9 NC_001973.1 + 85334 0.67 0.846716
Target:  5'- uUCGAgGUCGgcucuUCGAgCCcGaCGCgCUCCUCCu -3'
miRNA:   3'- -AGCU-CAGC-----AGCU-GGuC-GCG-GAGGAGG- -5'
7765 5' -57.9 NC_001973.1 + 61313 0.67 0.830024
Target:  5'- -gGAGgcggccUCGUCG-CCGGCGCgcagcugCUUCUCCg -3'
miRNA:   3'- agCUC------AGCAGCuGGUCGCG-------GAGGAGG- -5'
7765 5' -57.9 NC_001973.1 + 59827 0.67 0.828394
Target:  5'- aCGAGgugCG-CGacaacgccgcgcugGCCAGCGCCcacuuggggCCUCCg -3'
miRNA:   3'- aGCUCa--GCaGC--------------UGGUCGCGGa--------GGAGG- -5'
7765 5' -57.9 NC_001973.1 + 9433 0.67 0.822638
Target:  5'- cUCGuaaCGaaggCGGCCGGCGCCUCC-Ca -3'
miRNA:   3'- -AGCucaGCa---GCUGGUCGCGGAGGaGg -5'
7765 5' -57.9 NC_001973.1 + 101099 0.67 0.822638
Target:  5'- cCG-GUCGUCGAUCAGUcgGCaCagCUCCu -3'
miRNA:   3'- aGCuCAGCAGCUGGUCG--CG-GagGAGG- -5'
7765 5' -57.9 NC_001973.1 + 123038 0.67 0.821809
Target:  5'- gUCGAGUCcagucuGUCGACCGGCacgggacGCgCUCUcgCCc -3'
miRNA:   3'- -AGCUCAG------CAGCUGGUCG-------CG-GAGGa-GG- -5'
7765 5' -57.9 NC_001973.1 + 155004 0.67 0.813432
Target:  5'- cCGAGUCGggacgCGACCaaccaaagucgcuGGCGCaaaCCUCa -3'
miRNA:   3'- aGCUCAGCa----GCUGG-------------UCGCGga-GGAGg -5'
7765 5' -57.9 NC_001973.1 + 32740 0.67 0.809185
Target:  5'- uUCGGGUCGcgcgCGcgauuguugaacaucACCaugGGCGUCUCCUCg -3'
miRNA:   3'- -AGCUCAGCa---GC---------------UGG---UCGCGGAGGAGg -5'
7765 5' -57.9 NC_001973.1 + 39945 0.68 0.797095
Target:  5'- gCGAGcgcaacUCG-CGcagccCCGGCGCCUCCgggCCg -3'
miRNA:   3'- aGCUC------AGCaGCu----GGUCGCGGAGGa--GG- -5'
7765 5' -57.9 NC_001973.1 + 154056 0.68 0.797095
Target:  5'- uUUGAGUCuGUCGACgAGC-CCgcaaCCUCg -3'
miRNA:   3'- -AGCUCAG-CAGCUGgUCGcGGa---GGAGg -5'
7765 5' -57.9 NC_001973.1 + 61496 0.68 0.791828
Target:  5'- aUCGuGGUCGUUGACUuugcguuucaacaugAGCGCCU--UCCa -3'
miRNA:   3'- -AGC-UCAGCAGCUGG---------------UCGCGGAggAGG- -5'
7765 5' -57.9 NC_001973.1 + 100453 0.68 0.788289
Target:  5'- cUCGAGuUCGccUCGACCGuGaCGCUUCgCUCUa -3'
miRNA:   3'- -AGCUC-AGC--AGCUGGU-C-GCGGAG-GAGG- -5'
7765 5' -57.9 NC_001973.1 + 86679 0.68 0.779351
Target:  5'- gCGcGcCGUCGAguaCCA-CGCCUUCUCCg -3'
miRNA:   3'- aGCuCaGCAGCU---GGUcGCGGAGGAGG- -5'
7765 5' -57.9 NC_001973.1 + 9820 0.68 0.779351
Target:  5'- aCGGcGUCGUCGGagaaGGCGCuUUCCUCg -3'
miRNA:   3'- aGCU-CAGCAGCUgg--UCGCG-GAGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.