miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
777 5' -51.6 NC_000852.3 + 37871 0.66 0.999042
Target:  5'- gGGgGAGGGCUCgg--GGCUGGGgguagGCUCg -3'
miRNA:   3'- -CCgCUCUUGAGgaagCCGAUCU-----UGAG- -5'
777 5' -51.6 NC_000852.3 + 37901 0.66 0.999042
Target:  5'- gGGgGAGGGCUCgg--GGCUGGGgguagGCUCg -3'
miRNA:   3'- -CCgCUCUUGAGgaagCCGAUCU-----UGAG- -5'
777 5' -51.6 NC_000852.3 + 7575 0.67 0.998614
Target:  5'- uGCGuucGGAAgauCUCCUUCGGCaGGAAUa- -3'
miRNA:   3'- cCGC---UCUU---GAGGAAGCCGaUCUUGag -5'
777 5' -51.6 NC_000852.3 + 85259 0.67 0.998614
Target:  5'- uGGCG-GAACUCCcaUCuGCagAGAGCUUa -3'
miRNA:   3'- -CCGCuCUUGAGGa-AGcCGa-UCUUGAG- -5'
777 5' -51.6 NC_000852.3 + 37419 0.68 0.996794
Target:  5'- uGCGAGAGCUCgCaaCGGUgaagAGAGCg- -3'
miRNA:   3'- cCGCUCUUGAG-GaaGCCGa---UCUUGag -5'
777 5' -51.6 NC_000852.3 + 222400 0.68 0.994966
Target:  5'- aGGCGAuuAgUCUguaucaUCGGCUaagGGAACUCa -3'
miRNA:   3'- -CCGCUcuUgAGGa-----AGCCGA---UCUUGAG- -5'
777 5' -51.6 NC_000852.3 + 141942 0.69 0.992373
Target:  5'- cGGCGuGGGgUCUUUUGGCgugGGAGCc- -3'
miRNA:   3'- -CCGCuCUUgAGGAAGCCGa--UCUUGag -5'
777 5' -51.6 NC_000852.3 + 151138 1.12 0.011091
Target:  5'- cGGCGAGAACUCCUUCGGCUAGAACUCc -3'
miRNA:   3'- -CCGCUCUUGAGGAAGCCGAUCUUGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.