miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7770 3' -51 NC_001973.1 + 2892 0.69 0.950873
Target:  5'- -----cGCGCGUCGUCGCGcuuugcuCGCCGc -3'
miRNA:   3'- cuaguaCGUGUAGCAGCGCau-----GUGGU- -5'
7770 3' -51 NC_001973.1 + 4876 0.66 0.99452
Target:  5'- --cCGUGCucguACAagGgcagCGCGUACGCCGg -3'
miRNA:   3'- cuaGUACG----UGUagCa---GCGCAUGUGGU- -5'
7770 3' -51 NC_001973.1 + 4978 0.66 0.99452
Target:  5'- cGGUCGUGCGaccgaagguguCGUCGUuggaCGCGUcCACUAc -3'
miRNA:   3'- -CUAGUACGU-----------GUAGCA----GCGCAuGUGGU- -5'
7770 3' -51 NC_001973.1 + 5834 0.67 0.982019
Target:  5'- cGAUCuggGCGCGUCGUUcggcgaGCGcacGCGCCGg -3'
miRNA:   3'- -CUAGua-CGUGUAGCAG------CGCa--UGUGGU- -5'
7770 3' -51 NC_001973.1 + 6105 0.67 0.985829
Target:  5'- --aCGUGCGCAUgaCGgcgCGCGaggGCGCCGc -3'
miRNA:   3'- cuaGUACGUGUA--GCa--GCGCa--UGUGGU- -5'
7770 3' -51 NC_001973.1 + 6333 0.76 0.69867
Target:  5'- --gCAUGCGCcgCGUCGUGUGCGgCGu -3'
miRNA:   3'- cuaGUACGUGuaGCAGCGCAUGUgGU- -5'
7770 3' -51 NC_001973.1 + 6880 0.67 0.988988
Target:  5'- aGAUCuUGCACGUCGagcgccacacUCGCGgcCAguCCAa -3'
miRNA:   3'- -CUAGuACGUGUAGC----------AGCGCauGU--GGU- -5'
7770 3' -51 NC_001973.1 + 7948 0.67 0.988988
Target:  5'- cGUgGUGCACGcgcccgCGUgCGCGUACGCgCGa -3'
miRNA:   3'- cUAgUACGUGUa-----GCA-GCGCAUGUG-GU- -5'
7770 3' -51 NC_001973.1 + 8044 0.71 0.902278
Target:  5'- aGAUCAUGUugGcucuccUCGUCGCGcugGCGCUc -3'
miRNA:   3'- -CUAGUACGugU------AGCAGCGCa--UGUGGu -5'
7770 3' -51 NC_001973.1 + 10777 0.72 0.865757
Target:  5'- cGUCGUGUugcaccaGCAgCGUCGCGUagGCGCCGa -3'
miRNA:   3'- cUAGUACG-------UGUaGCAGCGCA--UGUGGU- -5'
7770 3' -51 NC_001973.1 + 15426 0.73 0.807252
Target:  5'- cGGUCGUGCAgAUCGUgCGUGUA-GCCGa -3'
miRNA:   3'- -CUAGUACGUgUAGCA-GCGCAUgUGGU- -5'
7770 3' -51 NC_001973.1 + 21599 0.68 0.979847
Target:  5'- --aCGUGCACccGUUGcUCGCGU-CGCCGa -3'
miRNA:   3'- cuaGUACGUG--UAGC-AGCGCAuGUGGU- -5'
7770 3' -51 NC_001973.1 + 23779 0.71 0.8887
Target:  5'- aGGUCuacgcGCGCAUCGUCGaGUACgGCCAc -3'
miRNA:   3'- -CUAGua---CGUGUAGCAGCgCAUG-UGGU- -5'
7770 3' -51 NC_001973.1 + 25052 0.7 0.931821
Target:  5'- cGGUCAUcaACAUCGaCGCGUucgcGCGCCAg -3'
miRNA:   3'- -CUAGUAcgUGUAGCaGCGCA----UGUGGU- -5'
7770 3' -51 NC_001973.1 + 27647 0.78 0.593234
Target:  5'- --cCGUGCACGUCGUCGUGUugAUgAg -3'
miRNA:   3'- cuaGUACGUGUAGCAGCGCAugUGgU- -5'
7770 3' -51 NC_001973.1 + 29015 0.69 0.962564
Target:  5'- -----gGCACAgcacgCGUCGCGgUACGCCu -3'
miRNA:   3'- cuaguaCGUGUa----GCAGCGC-AUGUGGu -5'
7770 3' -51 NC_001973.1 + 31405 0.72 0.881546
Target:  5'- -cUCGUGCuCGUCGUCGUGguggGCACg- -3'
miRNA:   3'- cuAGUACGuGUAGCAGCGCa---UGUGgu -5'
7770 3' -51 NC_001973.1 + 32044 0.67 0.982019
Target:  5'- --aCAUGCGCAUCG-CGUugccggcgGUGCGCUg -3'
miRNA:   3'- cuaGUACGUGUAGCaGCG--------CAUGUGGu -5'
7770 3' -51 NC_001973.1 + 33571 0.67 0.987486
Target:  5'- -----cGCACAgCGUCGCcucgcucgacacGUGCACCAc -3'
miRNA:   3'- cuaguaCGUGUaGCAGCG------------CAUGUGGU- -5'
7770 3' -51 NC_001973.1 + 34223 0.7 0.941852
Target:  5'- aGGUCGUGCagcucgcgcGCGUCGUUGCuGUccaucACGCCGa -3'
miRNA:   3'- -CUAGUACG---------UGUAGCAGCG-CA-----UGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.