miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7770 5' -64.5 NC_001973.1 + 6487 0.66 0.599844
Target:  5'- cGUCaAGGGCGUgcuguaccggcuGGGcGGCGCGgGCGUGc -3'
miRNA:   3'- -CGGcUCCUGCG------------CCU-CCGCGCgCGCGC- -5'
7770 5' -64.5 NC_001973.1 + 4201 0.66 0.599844
Target:  5'- aGCUgGAGGugcauGCGCuGGaAGGCGCGCcugccgGCGCu -3'
miRNA:   3'- -CGG-CUCC-----UGCG-CC-UCCGCGCG------CGCGc -5'
7770 5' -64.5 NC_001973.1 + 158723 0.66 0.596995
Target:  5'- cGCCGAGaucaGGCGaGGAguccagcugaagccGGCGaccgaGCGCGCGc -3'
miRNA:   3'- -CGGCUC----CUGCgCCU--------------CCGCg----CGCGCGC- -5'
7770 5' -64.5 NC_001973.1 + 101551 0.66 0.596995
Target:  5'- uGuuGGGGugGCGcGugguccAGGCGCGCacguugcucacgucGCGCc -3'
miRNA:   3'- -CggCUCCugCGC-C------UCCGCGCG--------------CGCGc -5'
7770 5' -64.5 NC_001973.1 + 62407 0.66 0.590355
Target:  5'- aCCGAGGA-GCGcGAcGUGCGgcUGCGCGa -3'
miRNA:   3'- cGGCUCCUgCGC-CUcCGCGC--GCGCGC- -5'
7770 5' -64.5 NC_001973.1 + 35358 0.66 0.590355
Target:  5'- -gCGAcucGGACGCGGGcuacuuuuuGCGCGCcGCGCu -3'
miRNA:   3'- cgGCU---CCUGCGCCUc--------CGCGCG-CGCGc -5'
7770 5' -64.5 NC_001973.1 + 81030 0.66 0.580892
Target:  5'- cGCCGAcggcGGuAUGCGGgccgcgucgacGGGCGUGCGCu-- -3'
miRNA:   3'- -CGGCU----CC-UGCGCC-----------UCCGCGCGCGcgc -5'
7770 5' -64.5 NC_001973.1 + 82312 0.66 0.580892
Target:  5'- gGC--AGGugGCGcuGGCGUGCGUGCc -3'
miRNA:   3'- -CGgcUCCugCGCcuCCGCGCGCGCGc -5'
7770 5' -64.5 NC_001973.1 + 28944 0.66 0.579948
Target:  5'- gGCUGGGGcgGCaGCGGGGGCcggcagucgggcgGCGaCGCGUu -3'
miRNA:   3'- -CGGCUCC--UG-CGCCUCCG-------------CGC-GCGCGc -5'
7770 5' -64.5 NC_001973.1 + 5865 0.66 0.57806
Target:  5'- cGCCGGcgucucgagaggcuGG-UGCGGcgcAGcGCGCGCGaCGCGa -3'
miRNA:   3'- -CGGCU--------------CCuGCGCC---UC-CGCGCGC-GCGC- -5'
7770 5' -64.5 NC_001973.1 + 136437 0.66 0.571462
Target:  5'- uGCgCGA--GCGCaGGGGCGCGUagggccGCGCGa -3'
miRNA:   3'- -CG-GCUccUGCGcCUCCGCGCG------CGCGC- -5'
7770 5' -64.5 NC_001973.1 + 63629 0.66 0.571462
Target:  5'- gGCCaaaucGGcCGCGuGGGGCG-GCGCGCc -3'
miRNA:   3'- -CGGcu---CCuGCGC-CUCCGCgCGCGCGc -5'
7770 5' -64.5 NC_001973.1 + 159484 0.66 0.562068
Target:  5'- cGCCGGuccuuGGAa-CaGAGGCGCGUcggGCGCGa -3'
miRNA:   3'- -CGGCU-----CCUgcGcCUCCGCGCG---CGCGC- -5'
7770 5' -64.5 NC_001973.1 + 96875 0.66 0.562068
Target:  5'- cGUgGuGGcCGCGGAucugugcgcGGCGgGCGCGuCGg -3'
miRNA:   3'- -CGgCuCCuGCGCCU---------CCGCgCGCGC-GC- -5'
7770 5' -64.5 NC_001973.1 + 27266 0.66 0.562068
Target:  5'- aGUCGAgcauguGGACGCGGAaaucuuuGCGCGCcucgagcuuGCGCa -3'
miRNA:   3'- -CGGCU------CCUGCGCCUc------CGCGCG---------CGCGc -5'
7770 5' -64.5 NC_001973.1 + 22963 0.66 0.562068
Target:  5'- cUCGAGuacGCGCGGcGGCGCGcCGaCGCc -3'
miRNA:   3'- cGGCUCc--UGCGCCuCCGCGC-GC-GCGc -5'
7770 5' -64.5 NC_001973.1 + 121314 0.66 0.559258
Target:  5'- cGCCGGcGGACGCGccGAcgagcucaccgacaGGCGgucgcgguCGUGCGCGa -3'
miRNA:   3'- -CGGCU-CCUGCGC--CU--------------CCGC--------GCGCGCGC- -5'
7770 5' -64.5 NC_001973.1 + 109522 0.66 0.552717
Target:  5'- cGCCGcuuGGcucuuGCGCuuuuGGGGCGCGagcCGCGCGa -3'
miRNA:   3'- -CGGCu--CC-----UGCGc---CUCCGCGC---GCGCGC- -5'
7770 5' -64.5 NC_001973.1 + 136658 0.66 0.552717
Target:  5'- aGCCGcuGGGCGU--AGGUGCGaaGCGCGa -3'
miRNA:   3'- -CGGCu-CCUGCGccUCCGCGCg-CGCGC- -5'
7770 5' -64.5 NC_001973.1 + 104220 0.66 0.543414
Target:  5'- cGuaGAGGcgauCGCGcucGGCGCGCuGCGCGu -3'
miRNA:   3'- -CggCUCCu---GCGCcu-CCGCGCG-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.