miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7771 3' -57.9 NC_001973.1 + 94291 0.66 0.857379
Target:  5'- -------cCGAGGGaaGGCGGCGCg- -3'
miRNA:   3'- cgauauaaGCUCCCcgCCGCCGCGgu -5'
7771 3' -57.9 NC_001973.1 + 31355 0.66 0.849673
Target:  5'- cGCUcugcGUggUCGccGcGGCGGUGuGCGCCAg -3'
miRNA:   3'- -CGA----UAuaAGCucC-CCGCCGC-CGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 61199 0.66 0.841776
Target:  5'- cGCgcgc-UCGGGcGGGCGcCGGCGCUc -3'
miRNA:   3'- -CGauauaAGCUC-CCCGCcGCCGCGGu -5'
7771 3' -57.9 NC_001973.1 + 42869 0.66 0.841776
Target:  5'- ------gUCGAGcGaGCGGCGGCGCg- -3'
miRNA:   3'- cgauauaAGCUC-CcCGCCGCCGCGgu -5'
7771 3' -57.9 NC_001973.1 + 17041 0.66 0.841776
Target:  5'- ------cUCGuGGuGGCGGuCGGCGCUu -3'
miRNA:   3'- cgauauaAGCuCC-CCGCC-GCCGCGGu -5'
7771 3' -57.9 NC_001973.1 + 96622 0.66 0.825433
Target:  5'- gGCUAccugUCGcGGccGGCGGCG-CGCCAa -3'
miRNA:   3'- -CGAUaua-AGCuCC--CCGCCGCcGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 83030 0.66 0.825433
Target:  5'- ----aAUUCGGcGGGCgaGGCGGCGCg- -3'
miRNA:   3'- cgauaUAAGCUcCCCG--CCGCCGCGgu -5'
7771 3' -57.9 NC_001973.1 + 7826 0.67 0.817003
Target:  5'- cGCUcucugUUGAGaacGGGCGGCGccGCGCCc -3'
miRNA:   3'- -CGAuaua-AGCUC---CCCGCCGC--CGCGGu -5'
7771 3' -57.9 NC_001973.1 + 4442 0.67 0.817003
Target:  5'- -----cUUCGAucaGCGGCGGCGCCGu -3'
miRNA:   3'- cgauauAAGCUcccCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 16887 0.67 0.807541
Target:  5'- uGCUGacaaacuUGUUCGcgccGGCGGCGGCgGCCu -3'
miRNA:   3'- -CGAU-------AUAAGCucc-CCGCCGCCG-CGGu -5'
7771 3' -57.9 NC_001973.1 + 71783 0.67 0.790766
Target:  5'- ------cUCGAGGc-CGGCGGCGCCc -3'
miRNA:   3'- cgauauaAGCUCCccGCCGCCGCGGu -5'
7771 3' -57.9 NC_001973.1 + 55207 0.67 0.772569
Target:  5'- aGC-GUGUUCucgacgacggcgGAGGcGGCGGCGGCGg-- -3'
miRNA:   3'- -CGaUAUAAG------------CUCC-CCGCCGCCGCggu -5'
7771 3' -57.9 NC_001973.1 + 124188 0.68 0.763284
Target:  5'- cCUcgAgcgCGAGGucGCGGCGGCGCg- -3'
miRNA:   3'- cGAuaUaa-GCUCCc-CGCCGCCGCGgu -5'
7771 3' -57.9 NC_001973.1 + 84150 0.68 0.744383
Target:  5'- cGCgcaacUCGAGGccgaGGCGgagaGCGGCGCCGc -3'
miRNA:   3'- -CGauauaAGCUCC----CCGC----CGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 100209 0.68 0.744383
Target:  5'- gGCU----UUGucGGGCGGCGGCaCCAa -3'
miRNA:   3'- -CGAuauaAGCucCCCGCCGCCGcGGU- -5'
7771 3' -57.9 NC_001973.1 + 122602 0.68 0.725102
Target:  5'- uGCUGcggcgGAGGcGuCGGCGGCGCCGa -3'
miRNA:   3'- -CGAUauaagCUCCcC-GCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 101945 0.68 0.724129
Target:  5'- aGCUcgGUgacgacgaUCGuGGuGGCGGCGacgaugcGCGCCAg -3'
miRNA:   3'- -CGAuaUA--------AGCuCC-CCGCCGC-------CGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 104258 0.69 0.70551
Target:  5'- aGCUGU--UC----GGCGGCGGCGCCGc -3'
miRNA:   3'- -CGAUAuaAGcuccCCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 103938 0.69 0.704524
Target:  5'- cGCgg----CGcGGGGCGugccgucGCGGCGCCAg -3'
miRNA:   3'- -CGauauaaGCuCCCCGC-------CGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 133294 0.69 0.69562
Target:  5'- -------aCGcGGccGGCGGCGGCGCCGu -3'
miRNA:   3'- cgauauaaGCuCC--CCGCCGCCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.