miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7771 3' -57.9 NC_001973.1 + 4442 0.67 0.817003
Target:  5'- -----cUUCGAucaGCGGCGGCGCCGu -3'
miRNA:   3'- cgauauAAGCUcccCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 7754 0.69 0.69562
Target:  5'- gGCgcgaacCGcGGcGGCGGCGGCGUCGa -3'
miRNA:   3'- -CGauauaaGCuCC-CCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 7826 0.67 0.817003
Target:  5'- cGCUcucugUUGAGaacGGGCGGCGccGCGCCc -3'
miRNA:   3'- -CGAuaua-AGCUC---CCCGCCGC--CGCGGu -5'
7771 3' -57.9 NC_001973.1 + 16887 0.67 0.807541
Target:  5'- uGCUGacaaacuUGUUCGcgccGGCGGCGGCgGCCu -3'
miRNA:   3'- -CGAU-------AUAAGCucc-CCGCCGCCG-CGGu -5'
7771 3' -57.9 NC_001973.1 + 17041 0.66 0.841776
Target:  5'- ------cUCGuGGuGGCGGuCGGCGCUu -3'
miRNA:   3'- cgauauaAGCuCC-CCGCC-GCCGCGGu -5'
7771 3' -57.9 NC_001973.1 + 30800 0.7 0.64355
Target:  5'- gGCggucgccCGAGGGGuUGGUGGCGUCGu -3'
miRNA:   3'- -CGauauaa-GCUCCCC-GCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 31355 0.66 0.849673
Target:  5'- cGCUcugcGUggUCGccGcGGCGGUGuGCGCCAg -3'
miRNA:   3'- -CGA----UAuaAGCucC-CCGCCGC-CGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 35441 0.73 0.433197
Target:  5'- cGCgcgGUcgUCGAcGaGGCGGCGGCGCa- -3'
miRNA:   3'- -CGa--UAuaAGCUcC-CCGCCGCCGCGgu -5'
7771 3' -57.9 NC_001973.1 + 37764 0.74 0.406384
Target:  5'- gGCaGUGUagaUCGGGGGGCGccgccgcGCGGCGCUc -3'
miRNA:   3'- -CGaUAUA---AGCUCCCCGC-------CGCCGCGGu -5'
7771 3' -57.9 NC_001973.1 + 42869 0.66 0.841776
Target:  5'- ------gUCGAGcGaGCGGCGGCGCg- -3'
miRNA:   3'- cgauauaAGCUC-CcCGCCGCCGCGgu -5'
7771 3' -57.9 NC_001973.1 + 50075 1.1 0.001705
Target:  5'- cGCUAUAUUCGAGGGGCGGCGGCGCCAc -3'
miRNA:   3'- -CGAUAUAAGCUCCCCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 50101 0.75 0.366197
Target:  5'- -------aCGGaGGGCGGCGGCGCCGc -3'
miRNA:   3'- cgauauaaGCUcCCCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 53851 0.72 0.535775
Target:  5'- ------cUCGccccGGcGGCGGCGGCGCCGc -3'
miRNA:   3'- cgauauaAGCu---CC-CCGCCGCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 54982 0.7 0.63549
Target:  5'- --------gGAGGcGGCGGCGGCGgCAu -3'
miRNA:   3'- cgauauaagCUCC-CCGCCGCCGCgGU- -5'
7771 3' -57.9 NC_001973.1 + 55207 0.67 0.772569
Target:  5'- aGC-GUGUUCucgacgacggcgGAGGcGGCGGCGGCGg-- -3'
miRNA:   3'- -CGaUAUAAG------------CUCC-CCGCCGCCGCggu -5'
7771 3' -57.9 NC_001973.1 + 56434 0.71 0.57226
Target:  5'- gGCUAaacUCGGcgccaagcucgggcGGGGCGGgcuCGGCGCCAa -3'
miRNA:   3'- -CGAUauaAGCU--------------CCCCGCC---GCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 56480 0.71 0.575247
Target:  5'- ------cUCGGgcGGGGCGGgcuCGGCGCCAa -3'
miRNA:   3'- cgauauaAGCU--CCCCGCC---GCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 56507 0.71 0.575247
Target:  5'- ------cUCGGgcGGGGCGGgcuCGGCGCCAa -3'
miRNA:   3'- cgauauaAGCU--CCCCGCC---GCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 56534 0.7 0.645564
Target:  5'- ------cUCGGgcGGGGCGGgcuCGGCGCCGa -3'
miRNA:   3'- cgauauaAGCU--CCCCGCC---GCCGCGGU- -5'
7771 3' -57.9 NC_001973.1 + 58030 0.7 0.605282
Target:  5'- cGCUcgAUcUCGGGcuccGGCGGCGGCGgCGg -3'
miRNA:   3'- -CGAuaUA-AGCUCc---CCGCCGCCGCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.